Related papers: A W[1]-Completeness Result for Generalized Permuta…
The equidistant subsequence pattern matching problem is considered. Given a pattern string $P$ and a text string $T$, we say that $P$ is an \emph{equidistant subsequence} of $T$ if $P$ is a subsequence of the text such that consecutive…
The perfect phylogeny is one of the most used models in different areas of computational biology. In this paper we consider the problem of the Persistent Perfect Phylogeny (referred as P-PP) recently introduced to extend the perfect…
An $\ell$-page stack layout (also known as an $\ell$-page book embedding) of a graph is a linear order of the vertex set together with a partition of the edge set into $\ell$ stacks (or pages), such that the endpoints of no two edges on the…
We introduce a new -as far as we know- problem, according to which we are asked to match sequences of two digits in matrices having entries among those two digits (but others too) and prove that this problem is NP-complete
We study computational complexity of the class of distance-constrained graph labeling problems from the fixed parameter tractability point of view. The parameters studied are neighborhood diversity and clique width. We rephrase the distance…
A permutation p is realized by the shift on N symbols if there is an infinite word on an N-letter alphabet whose successive left shifts by one position are lexicographically in the same relative order as p. The set of realized permutations…
In this paper we describe a data structure that supports pattern matching queries on a dynamically arriving text over an alphabet ofconstant size. Each new symbol can be prepended to $T$ in O(1) worst-case time. At any moment, we can report…
Recently, Brand, Ganian and Simonov introduced a parameterized refinement of the classical PAC-learning sample complexity framework. A crucial outcome of their investigation is that for a very wide range of learning problems, there is a…
An infinite permutation is a linear order on the set N. We study the properties of infinite permutations generated by fixed points of some uniform binary morphisms, and find the formula for their complexity.
Vertex integrity is a graph parameter that measures the connectivity of a graph. Informally, its meaning is that a graph has small vertex integrity if it has a small separator whose removal disconnects the graph into connected components…
We examine ordered graphs, defined as graphs with linearly ordered vertices, from the perspective of homomorphisms (and colorings) and their complexities. We demonstrate the corresponding computational and parameterized complexities, along…
NP complete problem is one of the most challenging issues. The question of whether all problems in NP are also in P is generally considered one of the most important open questions in mathematics and theoretical computer science as it has…
We investigate the parameterized complexity of finding subgraphs with hereditary properties on graphs belonging to a hereditary graph class. Given a graph $G$, a non-trivial hereditary property $\Pi$ and an integer parameter $k$, the…
For a first-order theory $T$, the Constraint Satisfaction Problem of $T$ is the computational problem of deciding whether a given conjunction of atomic formulas is satisfiable in some model of $T$. In this article we develop sufficient…
In Petri net synthesis we ask whether a given transition system $A$ can be implemented by a Petri net $N$. Depending on the level of accuracy, there are three ways how $N$ can implement $A$: an embedding, the least accurate implementation,…
We study permutation (jumbled/Abelian) pattern matching over a general alphabet $\Sigma$. Given a pattern P of length m and a text T of length n, the classical task is to decide whether T contains a length-m substring whose Parikh vector…
In resolving instances of a computational problem, if multiple instances of interest share a feature in common, it may be fruitful to compile this feature into a format that allows for more efficient resolution, even if the compilation is…
We consider subsequences with gap constraints, i.e., length-k subsequences p that can be embedded into a string w such that the induced gaps (i.e., the factors of w between the positions to which p is mapped to) satisfy given gap…
A linear extension of a poset $P$ is a permutation of the elements of the set that respects the partial order. Let $L(P)$ denote the number of linear extensions. It is a #P complete problem to determine $L(P)$ exactly for an arbitrary…
Correspondence homomorphisms are both a generalization of standard homomorphisms and a generalization of correspondence colourings. For a fixed target graph $H$, the problem is to decide whether an input graph $G$, with each edge labeled by…