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We extend our study of a simple model of biological coevolution to its statistical properties. Staring with a complete description in terms of a master equation, we provide its relation to the deterministic evolution equations used in…

Populations and Evolution · Quantitative Biology 2007-05-23 R. K. P. Zia , Per Arne Rikvold

Stochastic models, based on random processes, may lead to power law distributions, which provide long range correlations. The observation of power law behavior and the presence of long range correlations in biological systems has been…

Statistical Mechanics · Physics 2008-03-26 Thomas Oikonomou

In a recent paper it was shown that, for chemical reaction networks possessing a subtle structural property called concordance, dynamical behavior of a very circumscribed (and largely stable) kind is enforced, so long as the kinetics lies…

Molecular Networks · Quantitative Biology 2012-04-26 Guy Shinar , Martin Feinberg

This work presents a more broadly applicable version of an energy inequality for weak solutions of evolution equations involving fractional time derivatives. Unlike the classical identity that relates the time derivative of the squared norm…

Analysis of PDEs · Mathematics 2025-08-11 Paulo M. Carvalho-Neto , Cicero L. Frota , Juan C. Oyola Ballesteros , Pedro G. P. Torelli

We explore a few-fermion mixture consisting of two components which are repulsively interacting and confined in a one-dimensional harmonic trap. Different scenarios of population imbalance ranging from the completely imbalanced case where…

Quantum Gases · Physics 2015-06-11 Ioannis Brouzos , Peter Schmelcher

This research is concerned with evolution equations and their forward-backward discretizations. Our first contribution is an estimation for the distance between iterates of sequences generated by forward-backward schemes, useful in the…

Optimization and Control · Mathematics 2019-12-16 Andres Contreras , Juan Peypouquet

Using a model of the environment and a value function, an agent can construct many estimates of a state's value, by unrolling the model for different lengths and bootstrapping with its value function. Our key insight is that one can treat…

Protein evolution involves mutations occurring across a wide range of time scales. In analogy with disordered systems in statistical physics, this dynamical heterogeneity suggests strong correlations between mutations happening at distinct…

Biomolecules · Quantitative Biology 2025-07-15 Saverio Rossi , Leonardo Di Bari , Martin Weigt , Francesco Zamponi

Dynamical properties of two-component mass-imbalanced few-fermion systems confined in a one-dimensional harmonic trap following a sudden quench of interactions are studied. It is assumed that initially the system is prepared in the…

Quantum Gases · Physics 2022-11-21 Dillip K. Nandy , Tomasz Sowiński

Evolution is simultaneously driven by a number of processes such as mutation, competition and random sampling. Understanding which of these processes is dominating the collective evolutionary dynamics in dependence on system properties is a…

Populations and Evolution · Quantitative Biology 2012-09-13 Hinrich Arnoldt , Marc Timme , Stefan Grosskinsky

Classical descriptions of enzyme kinetics ignore the physical nature of the intracellular environment. Main implicit assumptions behind such approaches are that reactions occur in compartment volumes which are large enough so that molecular…

Subcellular Processes · Quantitative Biology 2009-10-26 Ramon Grima

We find a class of open-system models in which individual quantum trajectories may depend on parameters that are undetermined by the full open-system evolution. This dependence is imprinted in the geometric phase associated with such…

Quantum Physics · Physics 2010-11-11 Patrik Pawlus , Erik Sjöqvist

Living systems are typically characterized by irreversible processes. A condition equivalent to the reversibility is the detailed balance, whose absence is an obstacle for analytically solving ecological models. We revisit a promising model…

Statistical Mechanics · Physics 2012-11-20 Jacopo Grilli , Sandro Azaele , Jayanth R. Banavar , Amos Maritan

In this note, we focus on a selection model problem: a mono-exponential model versus a bi-exponential one. This is done in the biological context of living cells, where small data are available. Classical statistics are revisited to improve…

Applications · Statistics 2011-05-31 Ph. Heinrich , J. Kahn , L. Héliot , D. Trinel

In recent years, the literature in the area of Bayesian asymptotics has been rapidly growing. It is increasingly important to understand the concept of posterior consistency and validate specific Bayesian methods, in terms of consistency of…

Statistics Theory · Mathematics 2008-12-18 Taeryon Choi , R. V. Ramamoorthi

Growth-fragmentation processes model systems of cells that grow continuously over time and then fragment into smaller pieces. Typically, on average, the number of cells in the system exhibits asynchronous exponential growth and, upon…

Probability · Mathematics 2023-06-08 Emma Horton , Alexander R. Watson

The nonequilibrium response and fluctuations of Markovian systems, both near and far from equilibrium, are best understood by varying their parameters along dynamical equivalence classes. In this note, I illustrate this approach for an…

Statistical Mechanics · Physics 2024-04-03 David Andrieux

Symmetry properties of the evolution equation and the state to be controlled are shown to determine the basic features of the linear control of unstable orbits. In particular, the selection of control parameters and their minimal number are…

chao-dyn · Physics 2009-10-30 R. O. Grigoriev , M. C. Cross

Behavioural differences may arise in the absence of genetic or environmental variation. Chaotic dynamics may influence behavioural development, and so this among-individual variation. We discuss methods and experimental designs to test this…

Populations and Evolution · Quantitative Biology 2018-03-23 David N Fisher , Matthew Brachmann , Joseph B Burant

How large ecosystems can create and maintain the remarkable biodiversity we see in nature is probably one of the biggest open questions in science, attracting attention from different fields, from Theoretical Ecology to Mathematics and…

Populations and Evolution · Quantitative Biology 2023-01-03 Violeta Calleja-Solanas , Nagi Khalil , Jesús Gómez-Gardeñes , Emilio Hernández-García , Sandro Meloni
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