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We give a self-contained introduction to the theory of directed graphs, leading up to the relationship between the Perron-Frobenius eigenvectors of a graph and its autocatalytic sets. Then we discuss a particular dynamical system on a fixed…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Sanjay Jain , Sandeep Krishna

We consider a Gaussian statistical model whose parameter space is given by the variances of random variables. Underlying this model we identify networks by interpreting random variables as sitting on vertices and their correlations as…

Mathematical Physics · Physics 2015-06-17 Domenico Felice , Stefano Mancini , Marco Pettini

A total dominating set in a graph is a set of vertices such that every vertex of the graph has a neighbor in the set. We introduce and study graphs that admit non-negative real weights associated to their vertices such that a set of…

Combinatorics · Mathematics 2015-05-12 Nina Chiarelli , Martin Milanic

This paper deals with identifiability of undirected dynamical networks with single-integrator node dynamics. We assume that the graph structure of such networks is known, and aim to find graph-theoretic conditions under which the state…

Optimization and Control · Mathematics 2018-07-24 Henk J. van Waarde , Pietro Tesi , M. Kanat Camlibel

Real-world graphs, such as social networks, financial transactions, and recommendation systems, often demonstrate dynamic behavior. This phenomenon, known as graph stream, involves the dynamic changes of nodes and the emergence and…

Machine Learning · Computer Science 2023-05-16 Yanping Zheng , Zhewei Wei , Jiajun Liu

Many dynamic networks coming from real-world contexts are link streams, i.e. a finite collection of triplets $(u,v,t)$ where $u$ and $v$ are two nodes having a link between them at time $t$. A very large number of studies on these objects…

Social and Information Networks · Computer Science 2018-05-17 Yannick Léo , Christophe Crespelle , Eric Fleury

Real complex systems are inherently time-varying. Thanks to new communication systems and novel technologies, it is today possible to produce and analyze social and biological networks with detailed information on the time of occurrence and…

Physics and Society · Physics 2012-04-17 V. Nicosia , J. Tang , M. Musolesi , G. Russo , C. Mascolo , V. Latora

The collective dynamics of interacting dynamical units on a network crucially depends on the properties of the network structure. Rather than considering large but finite graphs to capture the network, one often resorts to graph limits and…

Dynamical Systems · Mathematics 2024-08-06 Christian Bick , Davide Sclosa

Graphs arise naturally in many real-world applications including social networks, recommender systems, ontologies, biology, and computational finance. Traditionally, machine learning models for graphs have been mostly designed for static…

Machine Learning · Computer Science 2020-04-28 Seyed Mehran Kazemi , Rishab Goel , Kshitij Jain , Ivan Kobyzev , Akshay Sethi , Peter Forsyth , Pascal Poupart

Exponential random graph theory is the complex network analog of the canonical ensemble theory from statistical physics. While it has been particularly successful in modeling networks with specified degree distributions, a naive model of a…

Disordered Systems and Neural Networks · Physics 2016-01-12 Juyong Park , Soon-Hyung Yook

In this work, we introduce a new and simple transformation from time series to complex networks based on markov-binary visibility graph(MBVG). Due to the simple structure of this transformation in comparison with other transformations be…

Data Analysis, Statistics and Probability · Physics 2011-10-25 Yaser Sadra , Zahra Arasteh-Fard , Sodief Ahadpour

Dynamic graph datasets often exhibit strong temporal patterns, such as recency, which prioritizes recent interactions, and popularity, which favors frequently occurring nodes. We demonstrate that simple heuristics leveraging only these…

Machine Learning · Computer Science 2025-02-10 Filip Cornell , Oleg Smirnov , Gabriela Zarzar Gandler , Lele Cao

In the sciences in general, the phrase "route to chaos" has come to refer to a metaphor when some physical, biological, economic, or social system transitions from one exhibiting order to one displaying randomness (or chaos). Sometimes the…

Dynamical Systems · Mathematics 2023-02-14 Sylvain Crovisier , Enrique Pujals

We present results from numerical studies of supervised learning operations in recurrent networks considered as graphs, leading from a given set of input conditions to predetermined outputs. Graphs that have optimized their output for…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 H. Atmanspacher , T. Filk

Graph-based models form a fundamental aspect of data representation in Data Sciences and play a key role in modeling complex networked systems. In particular, recently there is an ever-increasing interest in modeling dynamic complex…

Data Structures and Algorithms · Computer Science 2015-09-18 Klaus Wehmuth , Artur Ziviani , Eric Fleury

We define a natural class of graphs by generalizing prior notions of visibility, allowing the representing regions and sightlines to be arbitrary. We consider mainly the case of compact connected representing regions, proving two results…

Combinatorics · Mathematics 2007-05-23 Mike Develin , Stephen Hartke , David Petrie Moulton

The field of hypothesis generation promises to reduce costs in neuroscience by narrowing the range of interventional studies needed to study various phenomena. Existing machine learning methods can generate scientific hypotheses from…

Machine Learning · Computer Science 2025-07-04 Zachary C. Brown , David Carlson

Researchers, policy makers, and engineers need to make sense of data from spreading processes as diverse as rumor spreading in social networks, viral infections, and water contamination. Classical questions include predicting infection…

Data Structures and Algorithms · Computer Science 2026-01-08 Ben Bals , Michelle Döring , Nicolas Klodt , George Skretas

We investigate graphs that can be disconnected into small components by removing a vanishingly small fraction of their vertices. We show that when a quantum network is described by such a graph, the network is efficiently controllable, in…

Quantum Physics · Physics 2017-07-05 Can Gokler , Seth Lloyd , Peter Shor , Kevin Thompson

In the quest to improve efficiency, interdependence and complexity are becoming defining characteristics of modern complex networks representing engineered and natural systems. Graph theory is a widely used framework for modeling such…

Social and Information Networks · Computer Science 2022-05-31 Sai Munikoti , Laya Das , Balasubramaniam Natarajan