Related papers: An Algorithm for Detecting Intrinsically Knotted G…
This paper aims to develop a mathematical foundation to model knitting with graphs. We provide a precise definition for knit objects with a knot theoretic component and propose a simple undirected graph, a simple directed graph, and a…
We say that a graph is intrinsically non-trivial if every spatial embedding of the graph contains a non-trivial spatial subgraph. We prove that an intrinsically non-trivial graph is intrinsically linked, namely every spatial embedding of…
Knotted molecules occur naturally and are designed by scientists to gain special biological and material properties. Understanding and utilizing knotting require efficient methods to recognize and generate knotted structures, which are…
Consider the following "local" cut-detection problem in a directed graph: We are given a starting vertex $s$ and need to detect whether there is a cut with at most $k$ edges crossing the cut such that the side of the cut containing $s$ has…
We consider the pattern detection problem in graphs: given a constant size pattern graph $H$ and a host graph $G$, determine whether $G$ contains a subgraph isomorphic to $H$. Our main results are: * We prove that if a pattern $H$ contains…
A Kirchhoff graph is a vector graph with orthogonal cycles and vertex cuts. An algorithm has been developed that constructs all the Kirchhoff graphs up to a fixed edge multiplicity. This algorithm is used to explore the structure of prime…
This paper focuses on the graphs in the Petersen family, the set of minor minimal intrinsically linked graphs. We prove there is a relationship between algebraic linking of an embedding and knotting in an embedding. We also present a more…
Minimal separators in graphs are an important concept in algorithmic graph theory. In particular, many problems that are NP-hard for general graphs are known to become polynomial-time solvable for classes of graphs with a polynomially…
These notes present two normal surface theory algorithms to detect the unknot and use the split-link algorithm to prove that the figure-eight knot is knotted.
We construct an extension of the Kontsevich integral of knots to knotted trivalent graphs, which commutes with orientation switches, edge deletions, edge unzips, and connected sums. In 1997 Murakami and Ohtsuki [MO] first constructed such…
Fleming and Foisy recently proved the existence of a digraph whose every embedding contains a $4$-component link, and left open the possibility that a directed graph with an intrinsic $n$-component link might exist. We show that, indeed,…
We show that deleting an edge of a 3-cycle in an intrinsically knotted graph gives an intrinsically linked graph.
Embedding large graphs in low dimensional spaces has recently attracted significant interest due to its wide applications such as graph visualization, link prediction and node classification. Existing methods focus on computing the…
This paper introduces new invariants of rigid vertex graph embeddings by using non-local combinatorial information that is available at each graphical node. The new non-local information that we use in this paper involves parity in the…
A knot is an an embedding of a circle into three-dimensional space. We say that a knot is unknotted if there is an ambient isotopy of the embedding to a standard circle. By representing knots via planar diagrams, we discuss the problem of…
A graph is intrinsically projectively linked (IPL) if its every embedding in projective space contains a nonsplit link. Some minor-minimal IPL graphs have been found previously. We determine that no minor-minimal IPL graphs on 16 edges…
A graph $H$ is said to be an induced minor of a graph $G$ if $H$ can be obtained from $G$ by a sequence of vertex deletions and edge contractions. Equivalently, $H$ is an induced minor of $G$ if there exists an induced minor model of $H$ in…
Vertex connectivity and edge connectivity are fundamental concepts in graph theory that have been widely studied from both structural and algorithmic perspectives. The focus of this paper is on computing these two parameters for graphs…
This thesis focuses on theoretical and algorithmic tools for determining the numbers of induced subgraphs in strongly regular graphs, SRGs, and on further applications of such numbers. We consider in more detail a restricted class of these…
A graph $G$ is said to be a $(k,\ell)$-graph if its vertex set can be partitioned into $k$ independent sets and $\ell$ cliques. It is well established that the recognition problem for $(k,\ell)$-graphs is NP-complete whenever $k \geq 3$ or…