Related papers: Graham's Tree Reconstruction Conjecture and a Wari…
For a positive integer $r$ and a vertex $v$ of a graph $G$, let $\mathcal{I}_G^{(r)}(v)$ denote the set of all independent sets of $G$ that have exactly $r$ elements and contain $v$. Hurlbert and Kamat conjectured that for any $r$ and any…
Galled trees are studied as a recombination model in population genetics. This class of phylogenetic networks is generalized into tree-child, galled and reticulation-visible network classes by relaxing a structural condition imposed on…
We present a constraint model for the problem of producing a tree decomposition of a graph. The inputs to the model are a simple graph G, the number of nodes in the desired tree decomposition and the maximum cardinality of each node in that…
We study the problem of learning a latent tree graphical model where samples are available only from a subset of variables. We propose two consistent and computationally efficient algorithms for learning minimal latent trees, that is, trees…
A major problem for inferring species trees from gene trees is that evolutionary processes can sometimes favour gene tree topologies that conflict with an underlying species tree. In the case of incomplete lineage sorting, this phenomenon…
This note presents an encoding and a decoding algorithms for a forest of (labelled) rooted uniform hypertrees and hypercycles in linear time, by using as few as $n - 2$ integers in the range $[1,n]$. It is a simple extension of the…
An identifying code $C$ of a graph $G$ is a dominating set of $G$ such that any two distinct vertices of $G$ have distinct closed neighbourhoods within $C$. These codes have been widely studied for over two decades. We give an improvement…
A strengthened version of Harborth's well-known conjecture -- known as Kleber's conjecture -- states that every planar graph admits a planar straight-line drawing where every edge has integer length and each vertex is restricted to the…
We introduce a logical foundation to reason on tree structures with constraints on the number of node occurrences. Related formalisms are limited to express occurrence constraints on particular tree regions, as for instance the children of…
For a loopless multigraph $G$, the fractional arboricity $Arb(G)$ is the maximum of $\frac{|E(H)|}{|V(H)|-1}$ over all subgraphs $H$ with at least two vertices. Generalizing the Nash-Williams Arboricity Theorem, the Nine Dragon Tree…
We find surprisingly simple formulas for the limiting probability that the rank of a randomly selected vertex in a randomly selected phylogenetic tree or generalized phylogenetic tree is a given integer.
The weighted spanning tree enumerator of a graph $G$ with weighted edges is the sum of the products of edge weights over all the spanning trees in $G$. In the special case that all of the edge weights equal $1$, the weighted spanning tree…
The decycling number of a graph $G$ is the minimum number of vertices whose removal from $G$ results in an acyclic subgraph. It is known that determining the decycling number of a graph $G$ is equivalent to finding the maximum induced…
Species tree estimation is a complex problem, due to the fact that different parts of the genome can have different evolutionary histories than the genome itself. One of the causes for this discord is incomplete lineage sorting (also called…
For any positive integer $h$, a graph $G=(V,E)$ is said to be $h$-magic if there exists a labeling $l:E(G)\to \mathbb{Z}_h -\{0\} $ such that the induced vertex set labeling $\ l^+ : V(G) \to \mathbb{Z}_h \ $ defined by $$ l^+ (v)=\sum_{uv…
We show that for any fixed dense graph G and bounded-degree tree T on the same number of vertices, a modest random perturbation of G will typically contain a copy of T . This combines the viewpoints of the well-studied problems of embedding…
Let $G$ be a 3-connected planar graph. Define the co-tree of a spanning tree $T$ of $G$ as the graph induced by the dual edges of $E(G)-E(T)$. The well-known cut-cycle duality implies that the co-tree is itself a tree. Let a $k$-tree be a…
Many recent results in combinatorics concern the relationship between the size of a set and the number of distances determined by pairs of points in the set. One extension of this question considers configurations within the set with a…
A graph is a $k$-leaf power of a tree $T$ if its vertices are leaves of $T$ and two vertices are adjacent in $T$ if and only if their distance in $T$ is at most $k$. Then $T$ is a $k$-leaf root of $G$. This notion was introduced by…
We study an abstract notion of tree structure which lies at the common core of various tree-like discrete structures commonly used in combinatorics: trees in graphs, order trees, nested subsets of a set, tree-decompositions of graphs and…