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We study the crossing-minimization problem in a layered graph drawing of planar-embedded rooted trees whose leaves have a given total order on the first layer, which adheres to the embedding of each individual tree. The task is then to…

Discrete Mathematics · Computer Science 2024-02-29 Julia Katheder , Stephen G. Kobourov , Axel Kuckuk , Maximilian Pfister , Johannes Zink

Galled trees are studied as a recombination model in population genetics. This class of phylogenetic networks is generalized into tree-child, galled and reticulation-visible network classes by relaxing a structural condition imposed on…

Populations and Evolution · Quantitative Biology 2020-02-28 Gabriel Cardona , Louxin Zhang

A closed-form formula is derived for the number of occurrences of matches of a multiset of patterns among all ordered (plane-planted) trees with a given number of edges. A pattern looks like a tree, with internal nodes and leaves, but also…

Discrete Mathematics · Computer Science 2020-06-30 Nachum Dershowitz

An L-shaped embedding of a tree in a point set is a planar drawing of the tree where the vertices are mapped to distinct points and every edge is drawn as a sequence of two axis-aligned line segments. There has been considerable work on…

Computational Geometry · Computer Science 2020-05-01 Torsten Mütze , Manfred Scheucher

We give direct bijective proofs of the symmetry of the distributions of the number of ascents and descents over standard Young tableaux of shape $\lambda$, where $\lambda$ is a rectangle $(n,n,\dots,n)$ or a truncated staircase…

Combinatorics · Mathematics 2025-03-17 Sergi Elizalde

Trees or rooted trees have been generously studied in the literature. A forest is a set of trees or rooted trees. Here we give recurrence relations between the number of some kind of rooted forest with $k$ roots and that with $k+1$ roots on…

Combinatorics · Mathematics 2017-02-08 Song Guo , Victor J. W. Guo

Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

The pattern-avoiding fillings of Young diagrams we study arose from Postnikov's work on positive Grassman cells. They are called Le-diagrams, and are in bijection with decorated permutations. Other closely-related diagrams are interpreted…

Combinatorics · Mathematics 2010-11-30 Matthieu Josuat-Vergès

This paper proves that two differently defined rooted binary trees are isomorphic. The first tree is one associated to a version of Farey sequences where the vertices correspond to the open intervals formed by two successive terms in the…

Combinatorics · Mathematics 2025-12-16 Makoto Nagata , Yoshinori Takei

This dissertation presents a multifaceted look into the structural decomposition of permutation classes. The theory of permutation patterns is a rich and varied field, and is a prime example of how an accessible and intuitive definition…

Combinatorics · Mathematics 2014-10-13 Cheyne Homberger

As a unification of increasing trees and plane trees, the weakly increasing trees labeled by a multiset was introduced by Lin-Ma-Ma-Zhou in 2021. Motived by some symmetries in plane trees proved recently by Dong, Du, Ji and Zhang, we…

Combinatorics · Mathematics 2025-02-14 Yang Li , Zhicong Lin

Several real-world and abstract structures and systems are characterized by marked hierarchy to the point of being expressed as trees. Because the study of these entities often involves sampling (or discovering) the tree nodes in a specific…

Physics and Society · Physics 2022-04-18 Alexandre Benatti , Luciano da F. Costa

We develop a notion of a dual of a graph, generalizing the definition of Goulden and Yong (which only applied to trees), and reproving their main result using our new notion. We in fact give three definitions of the dual: a graph-theoretic…

Combinatorics · Mathematics 2017-04-12 Nikolaos Apostolakis , Kerry Ojakian

We study several enumeration problems connected to linear trees, a broad class which includes stars, paths, generalized stars, and caterpillars. We provide generating functions for counting the number of linear trees on $n$ vertices,…

Combinatorics · Mathematics 2020-03-23 Tanay Wakhare , Eric Wityk , Charles R. Johnson

Baryshnikov and Romik derived the combinatorial identities for the numbers of the $m$-strip tableaux. This generalized the classical Andr\'e's theorem for the number of up-down permutations. They asked for a bijective proof for the…

Combinatorics · Mathematics 2015-05-26 Emma Yu Jin

Combinatorial spiders are a model for the invariant space of the tensor product of representations. The basic objects, webs, are certain directed planar graphs with boundary; algebraic operations on representations correspond to…

Combinatorics · Mathematics 2010-05-27 Julianna Tymoczko

Succinct data structures give space-efficient representations of large amounts of data without sacrificing performance. They rely one cleverly designed data representations and algorithms. We present here the formalization in Coq/SSReflect…

Programming Languages · Computer Science 2019-07-03 Reynald Affeldt , Jacques Garrigue , Xuanrui Qi , Kazunari Tanaka

A well-labelled positive path of size n is a pair (p,\sigma) made of a word p=p_1p_2...p_{n-1} on the alphabet {-1, 0,+1} such that the sum of the letters of any prefix is non-negative, together with a permutation \sigma of {1,2,...,n} such…

Combinatorics · Mathematics 2010-10-04 Olivier Bernardi , Bertrand Duplantier , Philippe Nadeau

We prove a new formula for the generating function of multitype Cayley trees counted according to their degree distribution. Using this formula we recover and extend several enumerative results about trees. In particular, we extend some…

Combinatorics · Mathematics 2013-04-08 Olivier Bernardi , Alejandro H. Morales

Let T be a weighted tree with n leaves. Let D_{i,j} be the distance between the leaves i and j. Let D_{i,j,k}= (D_{i,j} + D_{j,k} +D_{i,k})/2. We will call such numbers "triple weights" of the tree. In this paper, we give a…

Algebraic Geometry · Mathematics 2011-04-25 Elena Rubei