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The goal of branch length estimation in phylogenetic inference is to estimate the divergence time between a set of sequences based on compositional differences between them. A number of software is currently available facilitating branch…

Populations and Evolution · Quantitative Biology 2012-07-06 Ania Kedzierska , Marta Casanellas

With the imminent start of LHC experiments, development of phenomenological tools, and in particular the Monte Carlo programs and algorithms, becomes urgent. A new algorithm for the generation of a parton shower initiated by the single…

High Energy Physics - Phenomenology · Physics 2010-03-25 S. Jadach , W. Placzek , M. Skrzypek , P. Stephens , Z. Was

We present a novel algorithm for anomaly detection on very large datasets and data streams. The method, named EXPected Similarity Estimation (EXPoSE), is kernel-based and able to efficiently compute the similarity between new data points…

Machine Learning · Computer Science 2016-06-07 Markus Schneider , Wolfgang Ertel , Fabio Ramos

We report on re-calculation of the next-to-leading order DGLAP evolution kernels performed in a scheme suited for Monte Carlo simulations of parton cascades (parton showers).

High Energy Physics - Phenomenology · Physics 2016-08-17 A. Kusina , O. Gituliar , S. Jadach , M. Skrzypek

We propose and analyze a generalized splitting method to sample approximately from a distribution conditional on the occurrence of a rare event. This has important applications in a variety of contexts in operations research, engineering,…

Methodology · Statistics 2019-09-10 Zdravko I. Botev , Pierre L'Ecuyer

We present a method aimed at sampling charge density fluctuations in Coulomb systems. The derivation follows from a functional integral representation of the partition function in terms of charge density fluctuations. Starting from the…

Soft Condensed Matter · Physics 2016-03-21 Frédéric Poitevin , Marc Delarue , Henri Orland

Sampling is a common strategy for generating text from probabilistic models, yet standard ancestral sampling often results in text that is incoherent or ungrammatical. To alleviate this issue, various modifications to a model's sampling…

Computation and Language · Computer Science 2024-01-08 Clara Meister , Tiago Pimentel , Luca Malagutti , Ethan G. Wilcox , Ryan Cotterell

We provide an example of a distribution preserving source separation method, which aims at addressing perceptual shortcomings of state-of-the-art methods. Our approach uses unconditioned generative models of signal sources. Reconstruction…

Audio and Speech Processing · Electrical Eng. & Systems 2024-09-13 Pedro J. Villasana T. , Janusz Klejsa , Lars Villemoes , Per Hedelin

Parton distributions encode the momentum-space structure and, in their generalizations, the spatial tomography of quarks and gluons inside hadrons, the building blocks of visible matter. We present a unified neural-network approach that…

High Energy Physics - Lattice · Physics 2026-05-29 Min-Huan Chu , Krzysztof Cichy , Martha Constantinou , Paweł Sznajder , Jakub Wagner

Accurate particle simulations are essential for the next generation of experiments in astroparticle physics. The Monte Carlo simulation library PROPOSAL is a flexible tool to efficiently propagate high-energy leptons and photons through…

Particle splitting methods are considered for the estimation of rare events. The probability of interest is that a Markov process first enters a set $B$ before another set $A$, and it is assumed that this probability satisfies a large…

Probability · Mathematics 2007-11-14 Thomas Dean , Paul Dupuis

Computational methods for discovering patterns of local correlations in sequences are important in computational biology. Here we show how to determine the optimal partitioning of aligned sequences into non-overlapping segments such that…

Computational Engineering, Finance, and Science · Computer Science 2012-06-26 Joseph Bockhorst , Nebojsa Jojic

We derive and analyze a generic, recursive algorithm for estimating all splits in a finite cluster tree as well as the corresponding clusters. We further investigate statistical properties of this generic clustering algorithm when it…

Machine Learning · Statistics 2021-11-02 Ingo Steinwart , Bharath K. Sriperumbudur , Philipp Thomann

We introduce an algorithm for generating a random sequence of fragmentation trees, which we call the ancestral branching algorithm. This algorithm builds on the recursive partitioning structure of a tree and gives rise to an associated…

Probability · Mathematics 2011-11-02 Harry Crane

This paper presents a new technique for data slicing of distributed programs running on a hierarchy of machines. Data slicing can be realized as a program transformation that partitions heaps of machines in a hierarchy into independent…

Programming Languages · Computer Science 2014-02-25 Mohamed A. El-Zawawy

There are many different ways in which change point analysis can be performed, from purely parametric methods to those that are distribution free. The ecp package is designed to perform multiple change point analysis while making as few…

Computation · Statistics 2013-11-26 Nicholas A. James , David S. Matteson

We present the determination of a set of parton distributions of the nucleon, at next-to-leading order, from a global set of deep-inelastic scattering data: NNPDF1.0. The determination is based on a Monte Carlo approach, with neural…

High Energy Physics - Phenomenology · Physics 2010-05-12 Richard D. Ball , Luigi Del Debbio , Stefano Forte , Alberto Guffanti , Jose I. Latorre , Andrea Piccione , Juan Rojo , Maria Ubiali

We present a new algorithm for an analytic parton shower. While the algorithm for the final-state shower has been known in the literature, the construction of an initial-state shower along these lines is new. The aim is to have a parton…

High Energy Physics - Phenomenology · Physics 2012-04-17 W. Kilian , J. Reuter , S. Schmidt , D. Wiesler

We describe how to apply adjoint sensitivity methods to backward Monte-Carlo schemes arising from simulations of particles passing through matter. Relying on this, we demonstrate derivative based techniques for solving inverse problems for…

Computational Physics · Physics 2022-05-11 Roland Grinis

We present two analytical formulae for estimating the sensitivity -- namely, the gradient or Jacobian -- at given realizations of an arbitrary-dimensional random vector with respect to its distributional parameters. The first formula…

Machine Learning · Statistics 2025-08-14 Pi-Yueh Chuang , Ahmed Attia , Emil Constantinescu
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