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Tandem duplication is an evolutionary process whereby a segment of DNA is replicated and proximally inserted. The different configurations that can arise from this process give rise to some interesting combinatorial questions. Firstly, we…

Combinatorics · Mathematics 2016-11-25 L Penso-Dolfin , CD Greenman

We consider the avoidance of patterns in inversion sequences that relate sorting via sorting machines including data structures such as pop stacks and stacks. Such machines have been studied under a variety of additional constraints and…

Combinatorics · Mathematics 2025-02-12 Toufik Mansour , Howard Skogman , Rebecca Smith

We discuss a new notion of pattern avoidance motivated by the operad theory: pattern avoidance in planar labelled trees. It is a generalisation of various types of consecutive pattern avoidance studied before: consecutive patterns in words,…

Combinatorics · Mathematics 2012-01-16 Vladimir Dotsenko

We enumerate and characterize some classes of alternating and reverse alternating involutions avoiding a single pattern of length three or four. If on one hand the case of patterns of length three is trivial, on the other hand, the length…

Combinatorics · Mathematics 2022-09-20 Marilena Barnabei , Flavio Bonetti , Niccolò Castronuovo , Matteo Silimbani

Algorithmic statistics considers the following problem: given a binary string $x$ (e.g., some experimental data), find a "good" explanation of this data. It uses algorithmic information theory to define formally what is a good explanation.…

Machine Learning · Computer Science 2015-09-21 Alexey Milovanov

The pattern avoidance problem seeks to construct a set with large fractal dimension that avoids a prescribed pattern, such as three term arithmetic progressions, or more general patterns, such as finding a set whose Cartesian product avoids…

Classical Analysis and ODEs · Mathematics 2019-12-03 Jacob Denson

We study the problem of generating interesting integer sequences with a combinatorial interpretation. For this we introduce a two-step approach. In the first step, we generate first-order logic sentences which define some combinatorial…

Logic in Computer Science · Computer Science 2023-02-10 Martin Svatoš , Peter Jung , Jan Tóth , Yuyi Wang , Ondřej Kuželka

This paper describes an alternative method of generating fixed points of certain substitution systems. This method centres on taking infinite words consisting of one repeated letter per word. These infinite words are then interlaced to form…

Dynamical Systems · Mathematics 2012-03-01 David Fletcher

We consider the question of computing the distribution of a permutation statistics over restricted permutations via enumeration schemes. The restricted permutations are those avoiding sets of vincular patterns (which include both classical…

Combinatorics · Mathematics 2014-01-03 Andrew M. Baxter

We consider the language consisting of all words such that it is possible to obtain the empty word by iteratively deleting powers. It turns out that in the case of deleting squares in binary words this language is regular, and in the case…

Formal Languages and Automata Theory · Computer Science 2017-12-08 John Machacek

We give several modifications of the Goulden-Jackson Cluster method for finding generating functions for words avoiding a given set of forbidden words. Our modifications include functions which can take into account various 'weights' on…

Combinatorics · Mathematics 2008-10-29 Elizabeth J. Kupin , Debbie S. Yuster

The sequential structure of language, and the order of words in a sentence specifically, plays a central role in human language processing. Consequently, in designing computational models of language, the de facto approach is to present…

Computation and Language · Computer Science 2021-08-25 Rishi Bommasani

A vocabulary is a list of words designating subsets from a grand set X. We model a vocabulary as a partition of X and study the aggregation of individual vocabularies into a collective one. We characterize aggregation rules when X is…

Theoretical Economics · Economics 2026-03-16 Marco LiCalzi , M. Alperen Yasar

This work proposes deep network models and learning algorithms for unsupervised and supervised binary hashing. Our novel network design constrains one hidden layer to directly output the binary codes. This addresses a challenging issue in…

Computer Vision and Pattern Recognition · Computer Science 2016-07-19 Thanh-Toan Do , Anh-Dzung Doan , Ngai-Man Cheung

Many algorithms have been developed for enumerating various combinatorial objects in time exponentially less than the number of objects. Two common classes of algorithms are dynamic programming and the transfer matrix method. This paper…

Combinatorics · Mathematics 2017-05-16 Andrew R. Conway

We consider the number of occurrences of subwords (non-consecutive sub-sequences) in a given word. We first define the notion of subword entropy of a given word that measures the maximal number of occurrences among all possible subwords. We…

Combinatorics · Mathematics 2025-10-06 Wenjie Fang

In this paper, we consider the problem of avoiding a single vincular pattern of length three by derangements in the flattened sense and find explicit formulas for the generating functions enumerating members of each corresponding avoidance…

Combinatorics · Mathematics 2025-04-22 Toufik Mansour , Mark Shattuck

We present a deterministic comparison-based algorithm that sorts sequences avoiding a fixed permutation $\pi$ in linear time, even if $\pi$ is a priori unkown. Moreover, the dependence of the multiplicative constant on the pattern $\pi$…

Data Structures and Algorithms · Computer Science 2024-09-13 Michal Opler

Let A be any set of positive integers and n a positive integer. A composition of n with parts in A is an ordered collection of one or more elements in A whose sum is n. We derive generating functions for the number of compositions of n with…

Combinatorics · Mathematics 2007-05-23 S. Heubach , T. Mansour

Permutations are usually enumerated by size, but new results can be found by enumerating them by inversions instead, in which case one must restrict one's attention to indecomposable permutations. In the style of the seminal paper by Simion…

Combinatorics · Mathematics 2025-05-28 Atli Fannar Franklín