Related papers: Conauto-2.0: Fast Isomorphism Testing and Automorp…
We introduce a new concept of a subgraph class called a superbubble for analyzing assembly graphs, and propose an efficient algorithm for detecting it. Most assembly algorithms utilize assembly graphs like the de Bruijn graph or the overlap…
Subgraph isomorphism counting is an important problem on graphs, as many graph-based tasks exploit recurring subgraph patterns. Classical methods usually boil down to a backtracking framework that needs to navigate a huge search space with…
Practical algorithms for solving the Subgraph Homeomorphism Problem are known for only a few small pattern graphs: among these are the wheel graphs with four, five, six, and seven spokes. The length and difficulty of the proofs leading to…
Subgraph isomorphism counting is known as #P-complete and requires exponential time to find the accurate solution. Utilizing representation learning has been shown as a promising direction to represent substructures and approximate the…
Decomposing a graph into a hierarchical structure via $k$-core analysis is a standard operation in any modern graph-mining toolkit. $k$-core decomposition is a simple and efficient method that allows to analyze a graph beyond its mere…
This paper presents a graph signal processing algorithm to uncover the intrinsic low-rank components and the underlying graph of a high-dimensional, graph-smooth and grossly-corrupted dataset. In our problem formulation, we assume that the…
We show that the existence of a homomorphism from an $n$-vertex graph $G$ to an $h$-vertex graph $H$ can be decided in time $2^{O(n)}h^{O(1)}$ and polynomial space if $H$ comes from a family of graphs that excludes a topological minor. The…
Graph learning algorithms have attained state-of-the-art performance on many graph analysis tasks such as node classification, link prediction, and clustering. It has, however, become hard to track the field's burgeoning progress. One…
Lifted probabilistic inference exploits symmetries in probabilistic graphical models to allow for tractable probabilistic inference with respect to domain sizes. To exploit symmetries in, e.g., factor graphs, it is crucial to identify…
A spanning subgraph of a graph G is called a [0,2]-factor of G, if for . is a union of some disjoint cycles, paths and isolate vertices, that span the graph G. It is easy to get a [0,2]-factor of G and there would be many of [0,2]-factors…
Edge-labeled graphs are widely used to describe relationships between entities in a database. Given a query subgraph that represents an example of what the user is searching for, we study the problem of efficiently searching for similar…
Graph matching or quadratic assignment, is the problem of labeling the vertices of two graphs so that they are as similar as possible. A common method for approximately solving the NP-hard graph matching problem is relaxing it to a convex…
Mining subgraphs with interesting structural properties from networks (or graphs) is a computationally challenging task. In this paper, we propose two algorithms for enumerating all connected induced subgraphs of a given cardinality from…
The PC algorithm is the state-of-the-art algorithm for causal structure discovery on observational data. It can be computationally expensive in the worst case due to the conditional independence tests are performed in an…
The graphlet kernel is a classical method in graph classification. It however suffers from a high computation cost due to the isomorphism test it includes. As a generic proxy, and in general at the cost of losing some information, this test…
With the emergence of graph databases, the task of frequent subgraph discovery has been extensively addressed. Although the proposed approaches in the literature have made this task feasible, the number of discovered frequent subgraphs is…
Hierarchical structure and repetition are prevalent in graphs originating from nature or engineering. These patterns can be represented by a class of parametric-structure graphs, which are defined by templates that generate structure by way…
In this work, we introduce bidirectional collision detection --- a new algorithmic tool that applies to the collision problems that arise in many isomorphism problems. For the group isomorphism problem, we show that bidirectional collision…
We develop the methodology of positioning graph vertices relative to each other to solve the problem of determining isomorphism of two undirected graphs. Based on the position of the vertex in one of the graphs, it is determined the…
We consider the problem of graph generation guided by network statistics, i.e., the generation of graphs which have given values of various numerical measures that characterize networks, such as the clustering coefficient and the number of…