Related papers: Rational tangle surgery and Xer recombination on c…
In this paper we verify that with the exception of the $(2, 2n+1)$ torus knots, positive 2-bridge knots up to 31 crossings do not admit chirally cosmetic surgeries. A knot $K$ admits chirally cosmetic surgeries if there exist surgeries…
This work discusses string compactifications on the torus with optional Z_4 x Z_4 or Z_2 x Z_2 orbifold action from the perspective of matrix factorizations. The method is brought to a level where model building on these backgrounds is…
We reconstruct a rational Lax matrix of size R+1 from its spectral curve (the desingularization of the characteristic polynomial) and some additional data. Using a twisted Cauchy--like kernel (a bi-differential of bi-weight (1-nu,nu)) we…
Long, flexible physical filaments are naturally tangled and knotted, from macroscopic string down to long-chain molecules. The existence of knotting in a filament naturally affects its configuration and properties, and may be very stable or…
We prove that if positive integer p-surgery along a knot K \subset S^3 produces an L-space and it bounds a sharp 4-manifold, then the knot genus obeys the bound 2g(K) -1 \leq p - \sqrt{3p+1}. Moreover, there exists an infinite family of…
We study systems of $2$-tangle equations which play an important role in the analysis of enzyme actions on DNA strands. We show that every system of framed tangle equations has at most one framed rational solution. Furthermore, we show that…
In hypercube approach to correlation functions in Chern-Simons theory (knot polynomials) the central role is played by the numbers of cycles, in which the link diagram is decomposed under different resolutions. Certain functions of these…
Dehn surgery on a knot determines a dual knot in the surgered manifold, the core of the filling torus. We consider duals of knots in $S^3$ that have a lens space surgery. Each dual supports a contact structure. We show that if a universally…
We consider the ways in which a 4-tangle T inside a unit cube can be extended outside the cube into a knot or link L. We present two links n(T) and d(T) such that the greatest common divisor of the determinants of these two links always…
We prove that if the lens space $L(n, 1)$ is obtained by a surgery along a knot in the lens space $L(3,1)$ that is distance one from the meridional slope, then $n$ is in $\{-6, \pm 1, \pm 2, 3, 4, 7\}$. This result yields a classification…
How do Seifert surgeries on hyperbolic knots arise from those on torus knots? We approach this question from a networking viewpoint. The Seifert Surgery Network is a 1-dimensional complex whose vertices correspond to Seifert surgeries; two…
We study the elastic behaviour of a supercoiled DNA molecule. The simplest model is that of a rod like chain, involving two elastic constants, the bending and the twist rigidities. We show that this model is singular and needs a small…
Cells deploy robust mechanisms to repair DNA damage, safeguarding genomic stability and cellular health, but the physical principles underlying these processes remain incompletely understood. Experiments show \emph{in vitro} that upon a DNA…
We predict various detectable mechanical responses to the presence of local DNA defects which are defined as short DNA segments exhibiting mechanical properties obviously different from the 50 nm persistence length based semiflexible…
DNA bending is biologically important for genome regulation and is relevant to a range of nanotechnological systems. Recent results suggest that sharp bending is much easier than implied by the widely-used worm-like chain model; many of…
To study the elastic properties of rod-like DNA nanostructures, we perform long simulations of these structure using the oxDNA coarse-grained model. By analysing the fluctuations in these trajectories we obtain estimates of the bend and…
DNA renaturation is the recombination of two complementary single strands to form a double helix. It is experimentally known that renaturation proceeds through the formation of a double stranded nucleus of several base pairs (the rate…
This paper focuses on the probability that a portion of DNA closes on itself through thermal fluctuations. We investigate the dependence of this probability upon the size r of a protein bridge and/or the presence of a kink at half DNA…
With the inspiration of vision transformers, the concept of depth-wise convolution revisits to provide a large Effective Receptive Field (ERF) using Large Kernel (LK) sizes for medical image segmentation. However, the segmentation…
DNA flexibility is a key determinant of biological function, from nucleosome positioning to transcriptional regulation, motivating a direct measurement of the bend-torque response of individual DNA molecules. In this work, DNA bending is…