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In data science, hypergraphs are natural models for data exhibiting multi-way relations, whereas graphs only capture pairwise. Nonetheless, many proposed hypergraph neural networks effectively reduce hypergraphs to undirected graphs via…

Machine Learning · Computer Science 2025-04-18 Tatyana Benko , Martin Buck , Ilya Amburg , Stephen J. Young , Sinan G. Aksoy

Matrices associated with graphs, such as the Laplacian, lead to numerous interesting graph problems expressed as linear systems. One field where Laplacian linear systems play a role is network analysis, e. g. for certain centrality measures…

Data Structures and Algorithms · Computer Science 2020-11-09 Elisabetta Bergamini , Michael Wegner , Dimitar Lukarski , Henning Meyerhenke

Algebraic multigrid (AMG) methods are powerful solvers with linear or near-linear computational complexity for certain classes of linear systems, Ax=b. Broadening the scope of problems that AMG can effectively solve requires the development…

Numerical Analysis · Mathematics 2019-02-15 James Brannick , Scott P. MacLachlan , Jacob B. Schroder , Ben S. Southworth

We present the algebraic representation and basic algorithms for MultiAspect Graphs (MAGs). A MAG is a structure capable of representing multilayer and time-varying networks, as well as higher-order networks, while also having the property…

Discrete Mathematics · Computer Science 2016-09-27 Klaus Wehmuth , Éric Fleury , Artur Ziviani

Algebraic multigrid (AMG) methods are among the most efficient solvers for linear systems of equations and they are widely used for the solution of problems stemming from the discretization of Partial Differential Equations (PDEs). The most…

Numerical Analysis · Mathematics 2025-06-18 Matteo Caldana , Paola F. Antonietti , Luca Dede'

Semantic parsing is the task of producing a structured meaning representation for natural language utterances or questions. Recent research has pointed out that the commonly-used sequence-to-sequence (seq2seq) semantic parsers struggle to…

Computation and Language · Computer Science 2022-06-06 Dora Jambor , Dzmitry Bahdanau

Large language models (LLMs) often struggle with knowledge-intensive tasks due to hallucinations and outdated parametric knowledge. While Retrieval-Augmented Generation (RAG) addresses this by integrating external corpora, its effectiveness…

Computation and Language · Computer Science 2026-02-04 Su Dong , Qinggang Zhang , Yilin Xiao , Shengyuan Chen , Chuang Zhou , Xiao Huang

Large language models (LLMs) are rapidly transforming various domains, including biomedicine and healthcare, and demonstrate remarkable potential from scientific research to new drug discovery. Graph-based retrieval-augmented generation…

Quantitative Methods · Quantitative Biology 2025-11-14 Guofeng Meng , Li Shen , Qiuyan Zhong , Wei Wang , Haizhou Zhang , Xiaozhen Wang

We present and release in open source format a sparse linear solver which efficiently exploits heterogeneous parallel computers. The solver can be easily integrated into scientific applications that need to solve large and sparse linear…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-07-26 Massimo Bernaschi , Alessandro Celestini , Pasqua D'Ambra , Flavio Vella

Graph-based Retrieval-Augmented Generation (RAG) has proven effective in integrating external knowledge into large language models (LLMs), improving their factual accuracy, adaptability, interpretability, and trustworthiness. A number of…

Information Retrieval · Computer Science 2026-04-28 Yingli Zhou , Yaodong Su , Youran Sun , Shu Wang , Taotao Wang , Runyuan He , Yongwei Zhang , Sicong Liang , Xilin Liu , Yuchi Ma , Yixiang Fang

Factor graphs are a very powerful graphical representation, used to model many problems in robotics. They are widely spread in the areas of Simultaneous Localization and Mapping (SLAM), computer vision, and localization. In this paper we…

Robotics · Computer Science 2024-10-28 Barbara Bazzana , Henrik Andreasson , Giorgio Grisetti

This paper is to give an overview of AMG methods for solving large scale systems of equations such as those from the discretization of partial differential equations. AMG is often understood as the acronym of "Algebraic Multi-Grid", but it…

Numerical Analysis · Mathematics 2016-11-11 Jinchao Xu , Ludmil T Zikatanov

Algebraic multigrid (AMG) methods derive their optimal efficiency from the interplay between a relaxation process and a corresponding coarse grid correction. In many standard formulations, relaxation and coarse-graining are analyzed and…

Numerical Analysis · Mathematics 2026-03-30 Rayan Moussa , Karsten Kahl

We introduce a novel Unsmoothed Aggregation (UA) Algebraic Multigrid (AMG) method combined with Preconditioned Conjugate Gradient (PCG) to overcome the limitations of Extended Position-Based Dynamics (XPBD) in high-resolution and…

Graphics · Computer Science 2025-05-20 Chunlei Li , Peng Yu , Tiantian Liu , Siyuan Yu , Yuting Xiao , Shuai Li , Aimin Hao , Yang Gao , Qinping Zhao

Large language models (LLMs) have demonstrated remarkable capabilities in a wide range of tasks, yet their application to specialized domains remains challenging due to the need for deep expertise. Retrieval-Augmented generation (RAG) has…

Computation and Language · Computer Science 2025-09-30 Qinggang Zhang , Shengyuan Chen , Yuanchen Bei , Zheng Yuan , Huachi Zhou , Zijin Hong , Hao Chen , Yilin Xiao , Chuang Zhou , Junnan Dong , Yi Chang , Xiao Huang

The multigrid algorithm is an efficient numerical method for solving a variety of elliptic partial differential equations (PDEs). The method damps errors at progressively finer grid scales, resulting in faster convergence compared to…

Numerical Analysis · Mathematics 2021-05-06 Francisco Holguin , GS Sidharth , Gavin Portwood

Recently, Retrieval-Augmented Generation (RAG) has achieved remarkable success in addressing the challenges of Large Language Models (LLMs) without necessitating retraining. By referencing an external knowledge base, RAG refines LLM…

Artificial Intelligence · Computer Science 2024-09-11 Boci Peng , Yun Zhu , Yongchao Liu , Xiaohe Bo , Haizhou Shi , Chuntao Hong , Yan Zhang , Siliang Tang

Agglomeration-based strategies are important both within adaptive refinement algorithms and to construct scalable multilevel algebraic solvers. In order to automatically perform agglomeration of polygonal grids, we propose the use of…

Numerical Analysis · Mathematics 2023-03-17 P. F. Antonietti , N. Farenga , E. Manuzzi , G. Martinelli , L. Saverio

A multi-view attributed graph (MVAG) G captures the diverse relationships and properties of real-world entities through multiple graph views and attribute views. Effectively utilizing all views in G is essential for MVAG clustering and…

Social and Information Networks · Computer Science 2025-08-14 Yiran Li , Gongyao Guo , Jieming Shi , Sibo Wang , Qing Li

A linear graph is a graph whose vertices are totally ordered. Biological and linguistic sequences with interactions among symbols are naturally represented as linear graphs. Examples include protein contact maps, RNA secondary structures…

Data Structures and Algorithms · Computer Science 2011-03-08 Yasuo Tabei , Daisuke Okanohara , Shuichi Hirose , Koji Tsuda