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A fundamental question in systems biology is the construction and training to data of mathematical models. Logic formalisms have become very popular to model signaling networks because their simplicity allows us to model large systems…

Quantitative Methods · Quantitative Biology 2012-12-27 Santiago Videla , Carito Guziolowski , Federica Eduati , Sven Thiele , Niels Grabe , Julio Saez-Rodriguez , Anne Siegel

The explication and the generation of explanations are prominent topics in artificial intelligence and data science, in order to make methods and systems more transparent and understandable for humans. This paper investigates the problem of…

Artificial Intelligence · Computer Science 2019-09-10 Martin Atzmueller , Cicek Güven , Dietmar Seipel

Deductive formalisms have been strongly developed in recent years; among them, Answer Set Programming (ASP) gained some momentum, and has been lately fruitfully employed in many real-world scenarios. Nonetheless, in spite of a large number…

Answer Set Programming (ASP) is a purely declarative formalism developed in the field of logic programming and nonmonotonic reasoning: computational problems are encoded by logic programs whose answer sets, corresponding to solutions, are…

Artificial Intelligence · Computer Science 2020-02-19 Francesco Calimeri , Simona Perri , Jessica Zangari

Answer Set Programming (ASP) is a truly-declarative programming paradigm proposed in the area of non-monotonic reasoning and logic programming, that has been recently employed in many applications. The development of efficient ASP systems…

Artificial Intelligence · Computer Science 2020-02-19 Marco Maratea , Luca Pulina , Francesco Ricca

Assumption-based argumentation (ABA) is a central structured argumentation formalism. As shown recently, answer set programming (ASP) enables efficiently solving NP-hard reasoning tasks of ABA in practice, in particular in the commonly…

Artificial Intelligence · Computer Science 2021-08-10 Tuomo Lehtonen , Johannes P. Wallner , Matti Järvisalo

We introduce an approach to detecting inconsistencies in large biological networks by using Answer Set Programming (ASP). To this end, we build upon a recently proposed notion of consistency between biochemical/genetic reactions and…

Logic in Computer Science · Computer Science 2010-07-02 Martin Gebser , Torsten Schaub , Sven Thiele , Philippe Veber

Modern scientific software stacks have become extremely complex, using many programming models and libraries to exploit a growing variety of GPUs and accelerators. Package managers can mitigate this complexity using dependency solvers, but…

Software Engineering · Computer Science 2022-10-18 Todd Gamblin , Massimiliano Culpo , Gregory Becker , Sergei Shudler

Decision tree models, including random forests and gradient-boosted decision trees, are widely used in machine learning due to their high predictive performance. However, their complex structures often make them difficult to interpret,…

Artificial Intelligence · Computer Science 2026-01-08 Akihiro Takemura , Masayuki Otani , Katsumi Inoue

Answer Set Programming (ASP) is a declarative logic formalism that allows to encode computational problems via logic programs. Despite the declarative nature of the formalism, some advanced expertise is required, in general, for designing…

Artificial Intelligence · Computer Science 2020-09-23 Elena Mastria , Jessica Zangari , Simona Perri , Francesco Calimeri

Answer Set Programming (ASP) is a powerful declarative programming paradigm commonly used for solving challenging search and optimization problems. The modeling languages of ASP are supported by sophisticated solving algorithms (solvers)…

Logic in Computer Science · Computer Science 2022-08-08 Zach Hansen

The interest in explainability in artificial intelligence (AI) is growing vastly due to the near ubiquitous state of AI in our lives and the increasing complexity of AI systems. Answer-set Programming (ASP) is used in many areas, among them…

Artificial Intelligence · Computer Science 2023-08-31 Tobias Geibinger

Metabolic networks play a crucial role in biology since they capture all chemical reactions in an organism. While there are networks of high quality for many model organisms, networks for less studied organisms are often of poor quality and…

Logic in Computer Science · Computer Science 2018-08-14 Clémence Frioux , Torsten Schaub , Sebastian Schellhorn , Anne Siegel , Philipp Wanko

Answer set programming (ASP) is a popular nonmonotonic-logic based paradigm for knowledge representation and solving combinatorial problems. Computing the answer set of an ASP program is NP-hard in general, and researchers have been…

Artificial Intelligence · Computer Science 2021-04-06 Fang Li , Huaduo Wang , Gopal Gupta

Deep neural networks have gained great success due to the increasing amounts of data, and diverse effective neural network designs. However, it also brings a heavy computing burden as the amount of training data is proportional to the…

Machine Learning · Computer Science 2023-10-19 Peng Yao , Chao Liao , Jiyuan Jia , Jianchao Tan , Bin Chen , Chengru Song , Di Zhang

Answer Set Programming (ASP) is a powerful modeling formalism for combinatorial problems. However, writing ASP models is not trivial. We propose a novel method, called Sketched Answer Set Programming (SkASP), aiming at supporting the user…

Artificial Intelligence · Computer Science 2018-08-23 Sergey Paramonov , Christian Bessiere , Anton Dries , Luc De Raedt

Answer set programming (ASP) is a form of declarative programming that allows to succinctly formulate and efficiently solve complex problems. An intuitive extension of this formalism is communicating ASP, in which multiple ASP programs…

Logic in Computer Science · Computer Science 2011-09-13 Kim Bauters , Jeroen Janssen , Steven Schockaert , Dirk Vermeir , Martine De Cock

Answer Set Programming (ASP) is a declarative programming language used for modeling and solving complex combinatorial problems. It has been successfully applied to a number of different realworld problems. However, learning its usage can…

Software Engineering · Computer Science 2026-03-31 Rafael Martins , Matthias Knorr , Ricardo Gonçalves

Answer Set Programming (ASP) is a declarative problem solving paradigm that can be used to encode a combinatorial problem as a logic program whose stable models correspond to the solutions of the considered problem. ASP has been widely…

Logic in Computer Science · Computer Science 2024-07-15 Van-Giang Trinh , Belaid Benhamou

Probabilistic programming has emerged as a powerful paradigm in statistics, applied science, and machine learning: by decoupling modelling from inference, it promises to allow modellers to directly reason about the processes generating…

Machine Learning · Statistics 2019-06-10 Maria I. Gorinova , Dave Moore , Matthew D. Hoffman
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