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The suprachiasmatic nucleus (SCN), also known as the circadian master clock, consists of a large population of oscillator neurons. Together, these neurons produce a coherent signal that drives the body's circadian rhythms. What properties…

Neurons and Cognition · Quantitative Biology 2023-01-04 Stéphanie M. C. Abo , José A. Carrillo , Anita T. Layton

Circadian clocks are biochemical oscillators that allow organisms to estimate the time of the day. These oscillators are inherently noisy due to the discrete nature of the reactants and the stochastic character of their interactions. To…

Biological Physics · Physics 2018-03-21 Michele Monti , David K. Lubensky , Pieter Rein ten Wolde

Circadian rhythmicity lies at the center of various important physiological and behavioral processes in mammals, such as sleep, metabolism, homeostasis, mood changes and more. It has been shown that this rhythm arises from self-sustained…

Neurons and Cognition · Quantitative Biology 2023-02-08 Yorgos M. Psarellis , Michail Kavousanakis , Michael A. Henson , Ioannis G. Kevrekidis

In mammals, most cells in the brain and peripheral tissues generate circadian (~24hr) rhythms autonomously. These self-sustained rhythms are coordinated and entrained by a master circadian clock in the suprachiasmatic nucleus (SCN). Within…

Molecular Networks · Quantitative Biology 2014-06-10 Jae Kyoung Kim , Zachary P. Kilpatrick , Matthew R. Bennett , Krešimir Josić

Rhythms in electrical activity in the membrane of cells in the suprachiasmatic nucleus (SCN) are crucial for the function of the circadian timing system, which is characterized by the expression of the so-called clock genes. Intracellular…

Biological Physics · Physics 2015-03-23 J. M. Casado , M. Morillo

The circadian clocks keeping time of day in many living organisms rely on self-sustained biochemical oscillations which can be entrained by external cues, such as light, to the 24-hour cycle induced by Earth rotation. However, environmental…

Quantitative Methods · Quantitative Biology 2015-05-20 Benjamin Pfeuty , Quentin Thommen , Marc Lefranc

The mammalian circadian system comprises a network of cell-autonomous oscillators, spanning from the central clock in the brain to peripheral clocks in other organs. These clocks are tightly coordinated to orchestrate rhythmic physiological…

Adaptation and Self-Organizing Systems · Physics 2022-12-29 Yitong Huang , Yuanzhao Zhang , Rosemary Braun

Circadian rhythms in mammals are controlled by the neurons located in the suprachiasmatic nucleus of the hypothalamus. In physiological conditions, the system of neurons is very efficiently entrained by the 24-hour light-dark cycle. Most of…

Biological Physics · Physics 2010-12-30 Niko Komin , Adrian C. Murza , Emilio Hernandez-Garcia , Raul Toral

Biological rhythms are generated by pacemaker organs, such as the heart pacemaker organ (the sinoatrial node) and the master clock of the circadian rhythms (the suprachiasmatic nucleus), which are composed of a network of autonomously…

Cell Behavior · Quantitative Biology 2016-08-23 Hiroshi Kori , Yoji Kawamura , Naoki Masuda

The synchronization of biological activity with the alternation of day and night (circadian rhythm) is performed in the brain by a group of neurons, constituting the suprachiasmatic nucleus (SCN). The SCN is divided into two subgroups of…

Adaptation and Self-Organizing Systems · Physics 2026-01-09 Jinshan Xu , Changgui Gu , Alain Pumir , Nicolas Garnier , Zonghua Liu

The ability of a circadian system to entrain to the 24-hour light-dark cycle is one of its most important properties. A new tool, called the entrainment map, was recently introduced to study this process for a single oscillator. Here we…

Dynamical Systems · Mathematics 2020-04-17 Guangyuan Liao , Casey Diekman , Amitabha Bose

Circadian clocks are the central timekeepers of life, allowing cells to anticipate changes between day and night. Experiments in recent years have revealed that circadian clocks can be highly stable, raising the question how reliably they…

Molecular Networks · Quantitative Biology 2016-06-22 Michele Monti , Pieter Rein ten Wolde

In the mammalian suprachiasmatic nucleus (SCN), a population of noisy cell-autonomous oscillators synchronizes to generate robust circadian rhythms at the organism-level. Within these cells two isoforms of Cryptochrome, Cry1 and Cry2,…

Molecular Networks · Quantitative Biology 2015-02-24 John H. Abel , Lukas A. Widmer , Peter C. St. John , Jörg Stelling , Francis J. Doyle

Understanding how multi-scale network structure influences circadian rhythms in the suprachiasmatic nucleus (SCN) is essential for uncovering the principles of rhythmic robustness and synchronization. Previous studies using synthetic SCN…

Physics and Society · Physics 2026-03-10 Youhao Zhuo , Yingpeng Liu , Jiao Wu , Kesheng Xu , Muhua Zheng

Entrainment of randomly coupled oscillator networks by periodic external forcing applied to a subset of elements is numerically and analytically investigated. For a large class of interaction functions, we find that the entrainment window…

Disordered Systems and Neural Networks · Physics 2015-06-25 Hiroshi Kori , Alexander S. Mikhailov

Periodic forcing of nonlinear oscillators leads to a large number of dynamic behaviors. The coupling of the cell-cycle to the circadian clock provides a biological realization of such forcing. Using high throughput single-cell microscopy,…

Many organisms possess both a cell cycle to control DNA replication and a circadian clock to anticipate changes between day and night. In some cases, these two rhythmic systems are known to be coupled by specific, cross-regulatory…

Molecular Networks · Quantitative Biology 2016-04-12 Joris Paijmans , Mark Bosman , Pieter Rein ten Wolde , David K. Lubensky

The Suprachiasmatic Nucleus (SCN) is a region in the brain that is responsible for controlling circadian rhythms. The SCN contains on the order of 10^4 neuronal oscillators which have a preferred period slightly longer than 24 hours. The…

Optimization and Control · Mathematics 2018-04-16 Rene Carmona , Christy V. Graves

Circadian rhythms are acquired through evolution to increase the chances for survival through synchronizing with the daylight cycle. Reliable synchronization is realized through two trade-off properties: regularity to keep time precisely,…

Biological Physics · Physics 2014-10-02 Yoshihiko Hasegawa , Masanori Arita

The temporal behaviour of segmentation clock oscillations show phase synchrony via mean field like coupling of delta protein restricting to nearest neighbours only, in a configuration of cells arranged in a regular three dimensional array.…

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