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Phylogenetics is a branch of computational biology that studies the evolutionary relationships among biological entities. Its long history and numerous applications notwithstanding, inference of phylogenetic trees from sequence data remains…

Populations and Evolution · Quantitative Biology 2024-03-26 Mingyang Zhou , Zichao Yan , Elliot Layne , Nikolay Malkin , Dinghuai Zhang , Moksh Jain , Mathieu Blanchette , Yoshua Bengio

Recommender systems (RS) serve as a fundamental tool for navigating the vast expanse of online information, with deep learning advancements playing an increasingly important role in improving ranking accuracy. Among these, graph neural…

Information Retrieval · Computer Science 2025-02-18 Bin Wu , Yihang Wang , Yuanhao Zeng , Jiawei Liu , Jiashu Zhao , Cheng Yang , Yawen Li , Long Xia , Dawei Yin , Chuan Shi

Gravitational-wave detection strategies are based on a signal analysis technique known as matched filtering. Despite the success of matched filtering, due to its computational cost, there has been recent interest in developing deep…

General Relativity and Quantum Cosmology · Physics 2022-11-03 Dwyer S. Deighan , Scott E. Field , Collin D. Capano , Gaurav Khanna

The Fast Folding Algorithm (FFA) is a phase-coherent search technique for periodic signals. It has rarely been used in radio pulsar searches, having been historically supplanted by the less computationally expensive Fast Fourier Transform…

Instrumentation and Methods for Astrophysics · Physics 2020-08-12 V. Morello , E. D. Barr , B. W. Stappers , E. F. Keane , A. G. Lyne

Face recognition systems (FRS) exhibit significant accuracy differences based on the user's gender. Since such a gender gap reduces the trustworthiness of FRS, more recent efforts have tried to find the causes. However, these studies make…

Computer Vision and Pattern Recognition · Computer Science 2025-01-22 Paul Jonas Kurz , Haiyu Wu , Kevin W. Bowyer , Philipp Terhörst

Recent progress in synthetic aperture sonar (SAS) technology and processing has led to significant advances in underwater imaging, outperforming previously common approaches in both accuracy and efficiency. There are, however, inherent…

Numerical Analysis · Mathematics 2017-06-28 John McKay , Anne Gelb , Vishal Monga , Raghu Raj

Feature selection aims to identify the most pattern-discriminative feature subset. In prior literature, filter (e.g., backward elimination) and embedded (e.g., Lasso) methods have hyperparameters (e.g., top-K, score thresholding) and tie to…

Machine Learning · Computer Science 2024-03-07 Wangyang Ying , Dongjie Wang , Haifeng Chen , Yanjie Fu

Spartan Spatial Random Fields (SSRFs) are generalized Gibbs random fields, equipped with a coarse-graining kernel that acts as a low-pass filter for the fluctuations. SSRFs are defined by means of physically motivated spatial interactions…

Information Theory · Computer Science 2012-04-12 Dionissios T. Hristopulos , Samuel Elogne

Search is a central problem in artificial intelligence, and breadth-first search (BFS) and depth-first search (DFS) are the two most fundamental ways to search. In this paper we derive estimates for average BFS and DFS runtime. The average…

Artificial Intelligence · Computer Science 2018-04-13 Tom Everitt , Marcus Hutter

Gene expression data matrices often contain missing expression values. In this paper, we describe a new algorithm, named improved fixed rank approximation algorithm (IFRAA), for missing values estimations of the large gene expression data…

Genomics · Quantitative Biology 2007-05-23 Shmuel Friedland , Mostafa Kaveh , Amir Niknejad , Hossein Zare

While increasingly deep networks are still in general desired for achieving state-of-the-art performance, for many specific inputs a simpler network might already suffice. Existing works exploited this observation by learning to skip…

Machine Learning · Computer Science 2020-01-06 Jianghao Shen , Yonggan Fu , Yue Wang , Pengfei Xu , Zhangyang Wang , Yingyan Lin

One of the focus areas of modern scientific research is to reveal mysteries related to genes and their interactions. The dynamic interactions between genes can be encoded into a gene regulatory network (GRN), which can be used to gain…

Optimization and Control · Mathematics 2020-07-16 Atte Aalto , Lauri Viitasaari , Pauliina Ilmonen , Laurent Mombaerts , Jorge Goncalves

Feature selection (FS) is a key research area in the machine learning and data mining fields, removing irrelevant and redundant features usually helps to reduce the effort required to process a dataset while maintaining or even improving…

Machine Learning · Computer Science 2018-11-02 Raul-Jose Palma-Mendoza , Daniel Rodriguez , Luis de-Marcos

It is important to identify the discriminative features for high dimensional clustering. However, due to the lack of cluster labels, the regularization methods developed for supervised feature selection can not be directly applied. To learn…

Machine Learning · Statistics 2025-07-16 Zhaoyu Xing , Yang Wan , Juan Wen , Wei Zhong

Generative Flow Networks (GFlowNets), a new family of probabilistic samplers, have recently emerged as a promising framework for learning stochastic policies that generate high-quality and diverse objects proportionally to their rewards.…

Machine Learning · Computer Science 2024-06-05 Chunhui Li , Cheng-Hao Liu , Dianbo Liu , Qingpeng Cai , Ling Pan

Recently, many convolutional neural networks (CNNs) for classification by time domain data of multisignals have been developed. Although some signals are important for correct classification, others are not. When data that do not include…

Signal Processing · Electrical Eng. & Systems 2023-02-27 Yuto Omae , Yusuke Sakai , Hirotaka Takahashi

Unsupervised feature selection (FS) is essential for high-dimensional learning tasks where labels are not available. It helps reduce noise, improve generalization, and enhance interpretability. However, most existing unsupervised FS methods…

Machine Learning · Computer Science 2025-11-13 Shira Lifshitz , Ofir Lindenbaum , Gal Mishne , Ron Meir , Hadas Benisty

In practical domains, high-dimensional data are usually associated with diverse semantic labels, whereas traditional feature selection methods are designed for single-label data. Moreover, existing multi-label methods encounter two main…

Machine Learning · Computer Science 2025-05-26 Yan Zhong , Xingyu Wu , Xinping Zhao , Li Zhang , Xinyuan Song , Lei Shi , Bingbing Jiang

Fuzzy systems (FSs) have enjoyed wide applications in various fields, including pattern recognition, intelligent control, data mining and bioinformatics, which is attributed to the strong interpretation and learning ability. In traditional…

Artificial Intelligence · Computer Science 2023-09-21 Fuping Hu , Zhaohong Deng , Zhenping Xie , Kup-Sze Choi , Shitong Wang

In this paper, a genetic algorithm-based frequency-domain feature search (GAFDS) method is proposed for the electroencephalogram (EEG) analysis of epilepsy. In this method, frequency-domain features are first searched and then combined with…

Machine Learning · Computer Science 2017-01-24 Tingxi Wen , Zhongnan Zhang