English
Related papers

Related papers: Haplotype Inference on Pedigrees with Recombinatio…

200 papers

In an extant population, how much information do extant individuals provide on the pedigree of their ancestors? Recent work by Kim, Mossel, Ramnarayan and Turner (2020) studied this question under a number of simplifying assumptions,…

Populations and Evolution · Quantitative Biology 2022-11-29 Elchanan Mossel , David Vulakh

Clustering with variable selection is a challenging yet critical task for modern small-n-large-p data. Existing methods based on sparse Gaussian mixture models or sparse K-means provide solutions to continuous data. With the prevalence of…

Machine Learning · Statistics 2020-04-28 Tanbin Rahman , Yujia Li , Tianzhou Ma , Lu Tang , George Tseng

Nowadays hybrid evolutionary algorithms, i.e, heuristic search algorithms combining several mutation operators some of which are meant to implement stochastically a well known technique designed for the specific problem in question while…

Neural and Evolutionary Computing · Computer Science 2014-04-23 Boris Mitavskiy , Jun He

The Horse Herd Optimization Algorithm (HOA) is a new meta-heuristic algorithm based on the behaviors of horses at different ages. The HOA was introduced recently to solve complex and high-dimensional problems. This paper proposes a binary…

Machine Learning · Computer Science 2023-11-30 Niloufar Mehrabi , Sayed Pedram Haeri Boroujeni , Elnaz Pashaei

The resource constrained project scheduling problem (RCPSP) is an NP-Hard combinatorial optimization problem. The objective of RCPSP is to schedule a set of activities without violating any activity precedence or resource constraints. In…

Neural and Evolutionary Computing · Computer Science 2022-04-26 Shelvin Chand , Kousik Rajesh , Rohitash Chandra

Sparse signal restoration is usually formulated as the minimization of a quadratic cost function $\|y-Ax\|_2^2$, where A is a dictionary and x is an unknown sparse vector. It is well-known that imposing an $\ell_0$ constraint leads to an…

Numerical Analysis · Computer Science 2015-05-29 Charles Soussen , Jérôme Idier , Junbo Duan , David Brie

The paper explores the problem of \emph{spectral compressed sensing}, which aims to recover a spectrally sparse signal from a small random subset of its $n$ time domain samples. The signal of interest is assumed to be a superposition of $r$…

Information Theory · Computer Science 2015-01-05 Yuxin Chen , Yuejie Chi

Inspired by biological vision systems, the over-complete local features with huge cardinality are increasingly used for face recognition during the last decades. Accordingly, feature selection has become more and more important and plays a…

Computer Vision and Pattern Recognition · Computer Science 2011-02-15 Yixiong Liang , Lei Wang , Yao Xiang , Beiji Zou

The vehicle routing problem is one of the most studied combinatorial optimization topics, due to its practical importance and methodological interest. Yet, despite extensive methodological progress, many recent studies are hampered by the…

Neural and Evolutionary Computing · Computer Science 2022-12-05 Thibaut Vidal

In this work, we propose a supervised, convex representation based audio hashing framework for bird species classification. The proposed framework utilizes archetypal analysis, a matrix factorization technique, to obtain convex-sparse…

Audio and Speech Processing · Electrical Eng. & Systems 2019-02-08 Anshul Thakur , Pulkit Sharma , Vinayak Abrol , Padmanabhan Rajan

Many real-world optimization problems are not naturally homogeneous vectors but composite design objects with heterogeneous parameters: integers, real values, Booleans, categoricals, complex-valued descriptors, and embedding vectors.…

Neural and Evolutionary Computing · Computer Science 2026-05-14 Alex Bogdan

A new optimization design is proposed for matrix completion by weighting the measurements and deriving the corresponding error bound. Accordingly, the Haplotype reconstruction using nuclear norm minimization with Weighted Constraint…

Signal Processing · Electrical Eng. & Systems 2021-01-13 Sina Majidian , M. Mohades , M. H. Kahaei

This paper examines the use of a hierarchical coevolutionary genetic algorithm under different partnering strategies. Cascading clusters of sub-populations are built from the bottom up, with higher-level sub-populations optimising larger…

Neural and Evolutionary Computing · Computer Science 2010-07-05 Uwe Aickelin , Larry Bull

In the past several years, the problem of genome assembly has received considerable attention from both biologists and computer scientists. An important component of current assembly methods is the scaffolding process. This process involves…

Genomics · Quantitative Biology 2013-07-03 Karl R. B. Schmitt , Aleksey V. Zimin , Guillaume Marcaçs , James A. Yorke , Michelle Girvan

Homophone characters are common in tonal syllable-based languages, such as Mandarin and Cantonese. The data-intensive end-to-end Automatic Speech Recognition (ASR) systems are more likely to mis-recognize homophone characters and rare words…

Computation and Language · Computer Science 2023-02-03 HoLam Chung , Junan Li , Pengfei Liu1 , Wai-Kim Leung , Xixin Wu , Helen Meng

Feature selection is an important data pre-processing in data mining and machine learning, which can reduce feature size without deteriorating model's performance. Recently, sparse regression based feature selection methods have received…

Machine Learning · Computer Science 2021-03-31 Zhenzhen Sun , Yuanlong Yu

Given a CNF formula F on n variables, the problem of model counting or #SAT is to compute the number of satisfying assignments of F . Model counting is a fundamental but hard problem in computer science with varied applications. Recent…

Data Structures and Algorithms · Computer Science 2020-05-01 Kuldeep S. Meel , S. Akshay

Symbolic regression (SR) searches for parametric models that accurately fit a dataset, prioritizing simplicity and interpretability. Despite this secondary objective, studies point out that the models are often overly complex due to…

Neural and Evolutionary Computing · Computer Science 2024-04-10 Guilherme Seidyo Imai Aldeia , Fabricio Olivetti de Franca , William G. La Cava

We introduce a new algorithm called {\sc Rec-Gen} for reconstructing the genealogy or \textit{pedigree} of an extant population purely from its genetic data. We justify our approach by giving a mathematical proof of the effectiveness of…

Data Structures and Algorithms · Computer Science 2020-05-11 Younhun Kim , Elchanan Mossel , Govind Ramnarayan , Paxton Turner

Hard Thresholding Pursuit (HTP) has aroused increasing attention for its robust theoretical guarantees and impressive numerical performance in non-convex optimization. In this paper, we introduce a novel tuning-free procedure, named…

Statistics Theory · Mathematics 2025-01-07 Yanhang Zhang , Zhifan Li , Shixiang Liu , Xueqin Wang , Jianxin Yin