Related papers: The disentangling number for phylogenetic mixtures
We consider the creation conditions of diverse hierarchical trees both analytically and numerically. A connection between the probabilities to create hierarchical levels and the probability to associate these levels into a united structure…
Let $\MP_d$ denote the space of polynomials $f: \C \to \C$ of degree $d\geq 2$, modulo conjugation by $\Aut(\C)$. Using properties of polynomial trees (as introduced in [DM, math.DS/0608759]), we show that if $f_n$ is a divergent sequence…
We prove that finding a rooted subtree with at least $k$ leaves in a digraph is a fixed parameter tractable problem. A similar result holds for finding rooted spanning trees with many leaves in digraphs from a wide family $\cal L$ that…
Label distribution learning (LDL) is a general learning framework, which assigns to an instance a distribution over a set of labels rather than a single label or multiple labels. Current LDL methods have either restricted assumptions on the…
Let $\mathcal{O}_n$ be the set of ordered labeled trees on ${0,...,n}$. A maximal decreasing subtree of an ordered labeled tree is defined by the maximal ordered subtree from the root with all edges being decreasing. In this paper, we study…
Throughout the last decade, we have seen much progress towards characterising and computing the minimum hybridisation number for a set P of rooted phylogenetic trees. Roughly speaking, this minimum quantifies the number of hybridisation…
We study the problem of high-dimensional multiple packing in Euclidean space. Multiple packing is a natural generalization of sphere packing and is defined as follows. Let $ N>0 $ and $ L\in\mathbb{Z}_{\ge2} $. A multiple packing is a set…
This paper investigates some properties of the number of subtrees of a tree with given degree sequence. These results are used to characterize trees with the given degree sequence that have the largest number of subtrees, which generalizes…
A binary phylogenetic network on a taxon set $X$ is a rooted acyclic digraph in which the degree of each nonleaf node is three and its leaves (i.e.degree-one nodes) are uniquely labeled with the taxa of $X$. It is tree-child if each nonleaf…
We probe the layers in multilingual BERT (mBERT) for phylogenetic and geographic language signals across 100 languages and compute language distances based on the mBERT representations. We 1) employ the language distances to infer and…
We show that the query containment problem for monadic datalog on finite unranked labeled trees can be solved in 2-fold exponential time when (a) considering unordered trees using the axes child and descendant, and when (b) considering…
An L(2, 1)-labeling of a graph is an assignment of nonnegative integers to the vertices of G such that adjacent vertices receive numbers differed by at least 2, and vertices at distance 2 are assigned distinct numbers. The L(2, 1)-labeling…
Phylogenetic networks are a generalization of evolutionary or phylogenetic trees that are commonly used to represent the evolution of species which cross with one another. A special type of phylogenetic network is an {\em $X$-cactus}, which…
Learning disentangled representations is regarded as a fundamental task for improving the generalization, robustness, and interpretability of generative models. However, measuring disentanglement has been challenging and inconsistent, often…
In this paper, we provide algorithms to rank and unrank certain degree-restricted classes of Cayley trees (spanning trees of the n-vertex complete graph). Specifically, we consider classes of trees that have a given set of leaves or a fixed…
The paper attempts to validate the effectiveness of tree classifiers to classify tabla strokes especially the ones which are overlapping in nature. It uses decision tree, ID3 and random forest as classifiers. A custom made data sets of 650…
The in-order traversal provides a natural correspondence between binary trees with a decreasing vertex labeling and endofunctions on a finite set. By suitably restricting the vertex labeling we arrive at a class of trees that we call…
Different sources of information might tell different stories about the evolutionary history of a given set of species. This leads to (rooted) phylogenetic trees that "disagree" on triples of species, which we call "conflict triples". An…
We study the problem of eliminating recursion from monadic datalog programs on trees with an infinite set of labels. We show that the boundedness problem, i.e., determining whether a datalog program is equivalent to some nonrecursive one is…
Distribution matching is the process of invertibly mapping a uniformly distributed input sequence onto sequences that approximate the output of a desired discrete memoryless source. The special case of a binary output alphabet and…