Related papers: Minimal knotted polygons in cubic lattices
A high-level description of an algorithm which computes the minimum perimeter triangle enclosing a convex polygon in linear time exists in the literature. Besides that an implementation of the algorithm is given in the subsequent work.…
We study several related models of self-avoiding polygons in a tubular subgraph of the simple cubic lattice, with a particular interest in the asymptotics of the knotting statistics. Polygons in a tube can be characterised by a finite…
We propose a novel algorithm for enumerating and listing all minimal cutsets of a given graph. It is known that this problem is NP-hard. We use connectivity properties of a given graph to develop an algorithm with reduced complexity for…
Minimum braids are a complete invariant of knots and links. This paper defines minimum braids, describes how they can be generated, presents tables for knots up to ten crossings and oriented links up to nine crossings, and uses minimum…
We describe an algorithm that recognizes some (perhaps all) intrinsically knotted (IK) graphs, and can help find knotless embeddings for graphs that are not IK. The algorithm, implemented as a Mathematica program, has already been used by…
Lattice models or structures are geometrical objects with mathematical forms, that are used to represent physical systems. They have been used widely in diverse fields, namely, in condensed matter physics, to study degrees of freedom of…
The mechanical properties of polymer knots under stretching in a bad or good solvent are investigated by applying a given force $F$ to a point of the knot while keeping another point fixed. The Monte Carlo sampling of the polymer…
The role of the topology and its relation with the geometry of biopolymers under different physical conditions is a nontrivial and interesting problem. Aiming at understanding this issue for a related simpler system, we use Monte Carlo…
We present a general procedure for constructing lattices of qubits with a Hamiltonian composed of nearest-neighbour two-body interactions such that the ground state encodes a cluster state. We give specific details for lattices in one-,…
This paper partially addresses the problem of characterizing the lengths of vectors in a family of Euclidean lattices that arise from any CM number field. We define a modified quadratic form on these lattices, the weighted norm, that…
In this work, we present the first implementation of the face-centered cubic (FCC) lattice model for protein structure prediction with a quantum algorithm. Our motivation to encode the FCC lattice stems from our observation that the FCC…
This study presents a generalised least squares based method for fitting polygons and ellipses to data points. The method is based on a trigonometric fitness function that approximates a unit shape accurately, making it applicable to…
We describe a polynomial time algorithm for, given an undirected graph G, finding the minimum dimension d such that G may be isometrically embedded into the d-dimensional integer lattice Z^d.
We introduce an alternative stratification of knots: by the size of lattice on which a knot can be first met. Using this classification, we find ratio of unknots and knots with more than 10 minimal crossings inside different lattices and…
We introduce a general method for designing tailored lattices of magnetic microtraps for ultracold atoms, on the basis of patterned permanently magnetized films. A fast numerical algorithm is used to automatically generate patterns which…
We develop a framework for discrete p-density and compression-radius profiles of lattice knots. For lattice polygons representing a fixed knot type, we define scale-free density quantities by dividing lattice length by chord-length spread…
Certain problems in quadratic minimization can be reduced to finding the point $x$ of a polyhedron ${ P}$ that minimizes the distance $\|x-p\|$ for some $p\notin { P}$. This amounts to a search for the appropriate face $F$ of ${ P}$ for…
A minimal knot is the intersection of a topologically embedded branched minimal disk in $\mathbb{R}^4$ $\mathbb{C}^2 $ with a small sphere centered at the branch point. When the lowest order terms in each coordinate component of the…
We study knots in $\mathbb{S}^3$ obtained by the intersection of a minimal surface in $\mathbb{R}^4$ with a small 3-sphere centered at a branch point. We construct examples of new minimal knots. In particular we show the existence of…
We investigate the isoperimetric problem for the Voronoi cells of three-dimensional lattices. Using Selling parameters, we derive an explicit closed formula for the scale-invariant isoperimetric quotient $F$ in terms of six non-negative…