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Experiments have reached a monumental capacity for designing and synthesizing microscopic particles for self-assembly, making it possible to precisely control particle concentrations, shapes, and interactions. However, more physical insight…

Soft Condensed Matter · Physics 2026-02-19 Maximilian C. Hübl , Thomas E. Videbæk , Daichi Hayakawa , W. Benjamin Rogers , Carl P. Goodrich

Despite broad interest in self-organizing systems, there are few quantitative, experimentally-applicable criteria for self-organization. The existing criteria all give counter-intuitive results for important cases. In this Letter, we…

Adaptation and Self-Organizing Systems · Physics 2011-11-10 Cosma Rohilla Shalizi , Kristina Lisa Shalizi , Robert Haslinger

We report on an original formalization of measure and integration theory in the Coq proof assistant. We build the Lebesgue measure following a standard construction that had not yet been formalized in proof assistants based on dependent…

Logic in Computer Science · Computer Science 2023-12-12 Reynald Affeldt , Cyril Cohen

We present an information-theoretic approach inspired by distributional clustering to assess the structural heterogeneity of particulate systems. Our method identifies communities of particles that share a similar local structure by…

Statistical Mechanics · Physics 2020-04-20 Joris Paret , Robert L. Jack , Daniele Coslovich

In the present paper, we propose the model of {\it structural information learning machines} (SiLeM for short), leading to a mathematical definition of learning by merging the theories of computation and information. Our model shows that…

Machine Learning · Computer Science 2020-01-28 Angsheng Li

This paper deals with the derivation of a collective model of cell populations out of an individual-based description of the underlying physical particle system. By looking at the spatial distribution of cells in terms of time-evolving…

Mathematical Physics · Physics 2014-11-12 Annachiara Colombi , Marco Scianna , Andrea Tosin

One aspect of evaluating the design for an experiment is the discovery of the relationships between subspaces of the data space. Initially we establish the notation and methods for evaluating an experiment with a single randomization.…

Statistics Theory · Mathematics 2009-11-23 C. J. Brien , R. A. Bailey

Objects are composed of a set of geometrically organized parts. We introduce an unsupervised capsule autoencoder (SCAE), which explicitly uses geometric relationships between parts to reason about objects. Since these relationships do not…

Machine Learning · Statistics 2019-12-03 Adam R. Kosiorek , Sara Sabour , Yee Whye Teh , Geoffrey E. Hinton

This paper reviews machine learning applications and approaches to detection, classification and control of intelligent materials and structures with embedded distributed computation elements. The purpose of this survey is to identify…

Machine Learning · Computer Science 2016-06-14 Dana Hughes , Nikolaus Correll

Appealing to several multivariate information measures---some familiar, some new here---we analyze the information embedded in discrete-valued stochastic time series. We dissect the uncertainty of a single observation to demonstrate how the…

Information Theory · Computer Science 2015-05-28 Ryan G. James , Christopher J. Ellison , James P. Crutchfield

Gauge-invariance is a fundamental concept in physics---known to provide the mathematical justification for all four fundamental forces. In this paper, we provide discrete counterparts to the main gauge theoretical concepts, directly in…

Formal Languages and Automata Theory · Computer Science 2018-07-03 Pablo Arrighi , Giuseppe Di Molfetta , Nathanaël Eon

The dynamics of systems of interacting agents is determined by the structure of their coupling network. The knowledge of the latter is, therefore, highly desirable, for instance, to develop efficient control schemes, to accurately predict…

Adaptation and Self-Organizing Systems · Physics 2021-10-13 Melvyn Tyloo , Robin Delabays , Philippe Jacquod

Structural independence is the (conditional) independence that arises from the structure rather than the precise numerical values of a distribution. We develop this concept and relate it to $d$-separation and structural causal models.…

Probability · Mathematics 2025-06-24 Matthias Georg Mayer

This work addresses the distributed estimation problem in a set membership framework. The agents of a network collect measurements which are affected by bounded errors, thus implying that the unknown parameters to be estimated belong to a…

Optimization and Control · Mathematics 2018-12-11 Francesco Farina , Andrea Garulli , Antonio Giannitrapani

This paper introduces a new interpretation of the Variational Autoencoder framework by taking a fully geometric point of view. We argue that vanilla VAE models unveil naturally a Riemannian structure in their latent space and that taking…

Machine Learning · Statistics 2022-11-04 Clément Chadebec , Stéphanie Allassonnière

We may attempt to encapsulate what we know about a physical system by a model structure, $S$. This collection of related models is defined by parametric relationships between system features; say observables (outputs), unobservable…

Methodology · Statistics 2021-02-16 Jason M. Whyte

This study presents a theoretical model for a self-replicating mechanical system inspired by biological processes within living cells and supported by computer simulations. The model decomposes self-replication into core components, each of…

Other Quantitative Biology · Quantitative Biology 2025-02-18 Ralph P. Lano

Intrinsic computation refers to how dynamical systems store, structure, and transform historical and spatial information. By graphing a measure of structural complexity against a measure of randomness, complexity-entropy diagrams display…

Chaotic Dynamics · Physics 2009-11-13 David P. Feldman , Carl S. McTague , James P. Crutchfield

Incompatible, i.e. non-jointly measurable quantum measurements are a necessary resource for many information processing tasks. It is known that increasing the number of distinct measurements usually enhances the incompatibility of a…

Quantum Physics · Physics 2023-09-28 Lucas Tendick , Hermann Kampermann , Dagmar Bruß

The understanding of morphogenesis in living organisms has been renewed by tremendous progressin experimental techniques that provide access to cell-scale, quantitative information both on theshapes of cells within tissues and on the genes…

Biological Physics · Physics 2015-09-30 Sham Tlili , Cyprien Gay , Francois Graner , Philippe Marcq , François Molino , Pierre Saramito
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