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Free energy calculations based on atomistic Hamiltonians and sampling are key to a first principles understanding of biomolecular processes, material properties, and macromolecular chemistry. Here, we generalize the Free Energy Perturbation…

Computational Physics · Physics 2023-07-19 Martin Reinhardt , Helmut Grubmüller

We briefly review the principles, mathematical bases, numerical shortcuts and applications of fast random walk (FRW) algorithms. This Monte Carlo technique allows one to simulate individual trajectories of diffusing particles in order to…

Computational Physics · Physics 2013-05-01 Denis Grebenkov

Theoretical predictions need quantified uncertainties for a meaningful comparison to experimental results. This is an idea which presently permeates the field of theoretical nuclear physics. In light of the recent progress in estimating…

Nuclear Theory · Physics 2017-03-15 B. D. Carlsson

We present a Monte Carlo method for direct incorporation of nuclear inputs in primordial nucleosynthesis calculations. This method is intended to remedy shortcomings of current error estimation, by eliminating intermediate data evaluations…

Astrophysics · Physics 2009-10-31 Kenneth M. Nollett , Scott Burles

Employing a recently developed Monte Carlo model, we study the fission of 240Pu induced by neutrons with energies from thermal to just below the threshold for second chance fission. Current measurements of the mean number of prompt neutrons…

Nuclear Theory · Physics 2009-10-29 R. Vogt , J. Randrup , J. Pruet , W. Younes

In a recent Letter, Baer et al. present a stochastic method for Kohn-Sham density functional theory calculations. Their convergence criterion is the self-averaging total energy per electron, which requires a number of statistical samples…

Materials Science · Physics 2014-04-15 Jonathan E. Moussa , Andrew D. Baczewski

In this paper, we provide an integral equation characterization of the solution to a Cauchy problem associated to the Feynman-Kac formula for a regime-switching diffusion. We give a sufficient condition to guarantee the uniqueness of…

Probability · Mathematics 2019-12-13 Adriana Ocejo

We show how information on the uniformity properties of a point set employed in numerical multidimensional integration can be used to improve the error estimate over the usual Monte Carlo one. We introduce a new measure of (non-)uniformity…

High Energy Physics - Phenomenology · Physics 2009-10-28 Jiri Hoogland , Ronald Kleiss

We solve two problems related to the fluctuations of time-integrated functionals of Markov diffusions, used in physics to model nonequilibrium systems. In the first we derive and illustrate the appropriate boundary conditions on the…

Statistical Mechanics · Physics 2023-02-01 Johan du Buisson

In this letter, a theoretical method for the analysis of diffusive flux/current to limited scale self-affine random fractals is presented and compared with experimentally measured electrochemical current for such roughness. The theory…

Chemical Physics · Physics 2007-05-23 Rama Kant

A new method is proposed to numerically extract the diffusivity of a (typically nonlinear) diffusion equation from underlying stochastic particle systems. The proposed strategy requires the system to be in local equilibrium and have…

Statistical Mechanics · Physics 2018-05-09 Peter Embacher , Nicolas Dirr , Johannes Zimmer , Celia Reina

The approximation of the Feynman-Kac semigroups by systems of interacting particles is a very active research field, with applications in many different areas. In this paper, we study the parallelization of such approximations. The total…

Probability · Mathematics 2013-06-18 Christelle Vergé , Cyrille Dubarry , Pierre Del Moral , Eric Moulines

A recently introduced theoretical framework for modeling the dynamics of X-ray amplified spontaneous emission is based on stochastic sampling of the density matrix of quantum emitters and the radiation field, similarly to other phase-space…

Optics · Physics 2024-06-17 Stasis Chuchurka , Vladislav Sukharnikov , Nina Rohringer

The Auxiliary Field Diffusion Monte Carlo method has been applied to simulate droplets of 7 and 8 neutrons. Results for realistic nucleon-nucleon interactions, which include tensor, spin--orbit and three--body forces, plus a standard…

Nuclear Theory · Physics 2009-11-10 Francesco Pederiva , A. Sarsa , K. E. Schmidt , S. Fantoni

We show that Monte Carlo sampling of the Feynman diagrammatic series (DiagMC) can be used for tackling hard fermionic quantum many-body problems in the thermodynamic limit by presenting accurate results for the repulsive Hubbard model in…

Strongly Correlated Electrons · Physics 2015-05-13 E. Kozik , K. Van Houcke , E. Gull , L. Pollet , N. Prokof'ev , B. Svistunov , M. Troyer

We present a simple derivation of a Feynman-Kac type formula to study fermionic systems. In this approach the real time or the imaginary time dynamics is expressed in terms of the evolution of a collection of Poisson processes. A computer…

Condensed Matter · Physics 2009-10-31 Matteo Beccaria , Carlo Presilla , Gian Fabrizio De Angelis , Giovanni Jona-Lasinio

The Campbell theorem, relating the variance of the current of a fission chamber (a "filtered Poisson process") to the intensity of the detection events and to the detector pulse shape, becomes invalid when the neutrons generating the…

Instrumentation and Detectors · Physics 2015-08-25 L. Pál , I. Pázsit

Aim of this note is to analyse branching Brownian motion within the class of models introduced in the recent paper [4] and called chemical diffusion master equations. These models provide a description for the probabilistic evolution of…

Probability · Mathematics 2024-01-23 Alberto Lanconelli , Berk Tan Perçin

This paper provides a finite difference discretization for the backward Feynman-Kac equation, governing the distribution of functionals of the path for a particle undergoing both reaction and diffusion [Hou and Deng, J. Phys. A: Math.…

Numerical Analysis · Mathematics 2019-11-01 Daxin Nie , Jing Sun , Weihua Deng

"Leaping" methods show great promise for significantly accelerating stochastic simulations of complex biochemical reaction networks. However, few practical applications of leaping have appeared in the literature to date. Here, we address…

Subcellular Processes · Quantitative Biology 2009-07-06 Leonard A. Harris , Aaron M. Piccirilli , Emily R. Majusiak , Paulette Clancy