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Despite being used for decades as stabilizers, amino acids (AAs) remain mysterious components of many medical and biological formulations. Hypotheses on their role vary ranging from hydrotropic to protein-specific effects (stabilization…

We show that equilibrium monomer and centre-of-mass concentration profiles of lattice polymers in a gravitational field, computed by Monte-Carlo simulations, provide an accurate and efficient road to the osmotic equation-of-state of polymer…

Soft Condensed Matter · Physics 2007-05-23 C. I. Addison , J. P. Hansen , A. A. Louis

High-resolution LCDM cosmological N-body simulations are used to study the properties of galaxy-size dark halos in different environments (cluster, void, and "field"). Halos in clusters and their surroundings have a median spin parameter…

Astrophysics · Physics 2009-11-13 V. Avila-Reese , P. Colin , S. Gottloeber , C. Firmani , C. Maulbetsch

Theory is presented for the phase stability of mixtures containing nanospheres and non-adsorbing reversible supramolecular polymers. This was made possible by incorporating the depletion thickness and osmotic pressure of reversible…

Soft Condensed Matter · Physics 2011-06-09 Remco Tuinier

An off-lattice Monte Carlo algorithm for solutions of equilibrium polymers (EP) is proposed. At low and moderate densities this is shown to reproduce faithfully the (static) properties found recently for flexible linear EP using a lattice…

Statistical Mechanics · Physics 2009-10-31 A. Milchev , J. P. Wittmer , D. P. Landau

By means of Langevin dynamics simulations, we investigate the gel formation of randomly functionalized polymers in solution, with the ability to form both intra- and intermolecular reversible bonds. Under highly dilute conditions, these…

Soft Condensed Matter · Physics 2021-09-15 Maud Formanek , Lorenzo Rovigatti , Emanuela Zaccarelli , Francesco Sciortino , Angel J. Moreno

We present results of N-body/gasdynamical simulations designed to investigate the evolution of X-ray clusters in a flat, low-density, cold dark matter (CDM) cosmogony. The density profile of the dark matter component can be fitted rather…

Astrophysics · Physics 2009-10-30 Vincent R. Eke , Julio F. Navarro , Carlos S. Frenk

Several commonly observed physical and biological systems are arranged in shapes that closely resemble an honeycomb cluster, that is, a tessellation of the plane by regular hexagons. Although these shapes are not always the direct product…

Optimization and Control · Mathematics 2025-01-10 Marco Caroccia , Kenneth DeMason , Francesco Maggi

In this chapter we review the rich behavior of polymer chains embedded in a quenched random environment. We first consider the problem of a Gaussian chain free to move in a random potential with short-ranged correlations. We derive the…

Disordered Systems and Neural Networks · Physics 2007-05-23 Yadin Y. Goldschmidt , Yohannes Shiferaw

Many systems in the realm of nanophysics from both the living and inorganic world display slow relaxation kinetics of energy fluctuations. In this paper we propose a general explanation for such phenomenon, based on the effects of…

Statistical Mechanics · Physics 2007-05-23 Francesco Piazza , Paolo De Los Rios , Yves-Henri Sanejouand

We present the first spectroscopic survey of intrinsically low Lx clusters at z>>0, with HST WFPC2 imaging and ground-based spectroscopy. We study 172 confirmed cluster members in a sample of ten clusters at z=0.23-0.3, with Lx<4.E43 h^{-2}…

Astrophysics · Physics 2009-11-07 Michael L. Balogh , R. G. Bower , Ian Smail , B. L. Ziegler , R. L. Davies , A. Gaztelu , A. Fritz

We report the results of extensive Dynamic Monte Carlo simulations of systems of self-assembled Equilibrium Polymers without rings in good solvent. Confirming recent theoretical predictions, the mean-chain length is found to scale as $\Lav…

Soft Condensed Matter · Physics 2009-10-31 J. P. Wittmer , A. Milchev , M. E. Cates

We perform particle resolved experimental studies on the heterogeneous crystallisation process of two compo- nent mixtures of hard spheres. The components have a size ratio of 0.39. We compared these with molecular dynamics simulations of…

Soft Condensed Matter · Physics 2017-10-25 I. Ríos de Anda , F. Turci , R. Sear , C. P. Royall

Theories of protein crystallization based on spheres that form close-packed crystals predict optimal assembly within a `slot' of second virial coefficients and enhanced assembly near the metastable liquid-vapor critical point. However, most…

Soft Condensed Matter · Physics 2014-04-04 Thomas K. Haxton , Stephen Whitelam

The crystallisation of entangled polymers from their melt is investigated using computer simulation with a coarse-grained model. Using hybrid Monte Carlo simulations enables us to probe the behaviour of long polymer chains. We identify…

Soft Condensed Matter · Physics 2020-06-12 Xiaoliang Tang , Fucheng Tian , Tingyu Xu , Liangbin Li , Aleks Reinhardt

Intracellular compartmentalization of proteins underpins their function and the metabolic processes they sustain. Various mass spectrometry-based proteomics methods (subcellular spatial proteomics) now allow high throughput subcellular…

Quantitative Methods · Quantitative Biology 2025-12-10 Ziyue Zheng , Loay J. Jabre , Matthew McIlvin , Mak A. Saito , Sangwon Hyun

The supramolecular organization of wheat gluten proteins is largely unknown due to the intrinsic complexity of this family of proteins and their insolubility in water. We fractionate gluten in a water/ethanol (50/50 v/v) and obtain a…

Soft Condensed Matter · Physics 2014-10-02 Mohsen Dahesh , Amélie Banc , Agnès Duri , Marie-Hélène Morel , Laurence Ramos

The structural properties resulting from the reciprocal influence between water and three well-known homologous disaccharides, namely trehalose, maltose and sucrose, in aqueous solutions have been investigated in the 4-66 wt % concentration…

Other Condensed Matter · Physics 2007-05-23 A. Lerbret , P. Bordat , F. Affouard , M. Descamps , F. Migliardo

Accurate predictions of the hydration free energy for anions typically have been more challenging than for cations. Hydrogen bond donation to the anion in hydrated clusters such as $\mathrm{F(H_2O)}_n{}^-$ can lead to delicate structures.…

Chemical Physics · Physics 2019-03-06 A. Muralidharan , L. R. Pratt , M. I. Chaudhari , S. B. Rempe

Analyses of cosmological hydrodynamic simulations of galaxy clusters suggest that X-ray masses can be underestimated by 10% to 30%. The largest bias originates by both violation of hydrostatic equilibrium and an additional temperature bias…

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