English
Related papers

Related papers: On the graph labellings arising from phylogenetics

200 papers

The Bell colouring graph $\mathcal{B}(G)$ of a graph $G$ is the graph whose vertices are the partitions of the vertex set of $G$ into independent sets, with an edge between two partitions if and only if one can be obtained from the other by…

Combinatorics · Mathematics 2026-04-15 Brian Hearn

Node classification is an important problem in graph data management. It is commonly solved by various label propagation methods that work iteratively starting from a few labeled seed nodes. For graphs with arbitrary compatibilities between…

Machine Learning · Computer Science 2020-03-06 Krishna Kumar P. , Paul Langton , Wolfgang Gatterbauer

In this paper we study variations of an old result by M\"{u}ller, Reiterman, and the last author stating that a countable graph has a subgraph with infinite degrees if and only if in any labeling of the vertices (or edges) of this graph by…

Combinatorics · Mathematics 2019-05-10 Andrii Arman , Bradley Elliott , Vojtěch Rödl

Phylogenetic networks are directed acyclic graphs that depict the genomic evolution of related taxa. Reticulation nodes in such networks (nodes with more than one parent) represent reticulate evolutionary events, such as recombination,…

Populations and Evolution · Quantitative Biology 2024-11-21 Alexey Markin , Sriram Vijendran , Oliver Eulenstein

We present a unified general method for the asymptotic study of graphs from the so-called "subcritical"$ $ graph classes, which include the classes of cacti graphs, outerplanar graphs, and series-parallel graphs. This general method works…

Combinatorics · Mathematics 2019-02-12 Michael Drmota , Éric Fusy , Mihyun Kang , Veronika Kraus , Juanjo Rué

In recent work, the authors developed a simple method of constructing topological spaces from certain well-behaved partially ordered sets -- those coming from sequences of relations between finite sets. This method associates a given poset…

General Topology · Mathematics 2025-09-11 Adam Bartoš , Tristan Bice , Alessandro Vignati

Graph convolutional network (GCN) provides a powerful means for graph-based semi-supervised tasks. However, as a localized first-order approximation of spectral graph convolution, the classic GCN can not take full advantage of unlabeled…

Machine Learning · Computer Science 2018-09-27 Yawei Luo , Tao Guan , Junqing Yu , Ping Liu , Yi Yang

We derive polynomial identities of arbitrary degree $n$ for syzygies degrees of numerical semigroups S_m=<d_1,...,d_m> and show that for n>=m they contain higher genera G_r=\sum_{s\in Z_>\setminus S_m}s^r of S_m. We find a number…

Commutative Algebra · Mathematics 2020-12-25 Leonid G. Fel

G\'abor Elek introduced the notion of a hyperfinite graph family: a collection of graphs is hypefinite if for every $\epsilon>0$ there is some finite $k$ such that each graph $G$ in the collection can be broken into connected components of…

Probability · Mathematics 2007-11-27 Oded Schramm

An identifying code of a graph is a dominating set which uniquely determines all the vertices by their neighborhood within the code. Whereas graphs with large minimum degree have small domination number, this is not the case for the…

Combinatorics · Mathematics 2017-01-02 Florent Foucaud , Guillem Perarnau , Oriol Serra

In this paper we investigate the extremal relationship between two well-studied graph parameters: the order of the largest homogeneous set in a graph $G$ and the maximal number of distinct degrees appearing in an induced subgraph of $G$,…

Combinatorics · Mathematics 2022-12-01 Eoin Long , Laurentiu Ploscaru

In graph theory, knowing the number of complete subgraphs with r vertices that a graph g has, limits the number of its complete subgraphs with s vertices, for s > r. A useful upper bound is provided by the Kruskal-Katona theorem, but this…

Combinatorics · Mathematics 2018-12-27 Robert Cowen

Each graph and choice of a commutative ring gives rise to an associated graphical group. In this article, we introduce and investigate graph polynomials that enumerate conjugacy classes of graphical groups over finite fields according to…

Group Theory · Mathematics 2022-03-14 Tobias Rossmann

To a finite, connected, unoriented graph of Betti-number g>=2 and valencies >=3 we associate a finitely summable, commutative spectral triple (in the sense of Connes), whose induced zeta functions encode the graph. This gives another…

Operator Algebras · Mathematics 2009-04-09 Jan Willem de Jong

Inference of phylogenetic networks is of increasing interest in the genomic era. However, the extent to which phylogenetic networks are identifiable from various types of data remains poorly understood, despite its crucial role in…

Populations and Evolution · Quantitative Biology 2025-05-01 Elizabeth S. Allman , Cecile Ane , Hector Banos , John A. Rhodes

For a graph $G$ and integer $k\geq1$, we define the token graph $F_k(G)$ to be the graph with vertex set all $k$-subsets of $V(G)$, where two vertices are adjacent in $F_k(G)$ whenever their symmetric difference is a pair of adjacent…

The main goal of this note is to provide a First-Order Logic with Betweenness (FOLB) axiomatization of the main classes of graphs occurring in Metric Graph Theory, in analogy to Tarski's axiomatization of Euclidean geometry. We provide such…

Combinatorics · Mathematics 2024-07-12 Jérémie Chalopin , Manoj Changat , Victor Chepoi , Jeny Jacob

We introduce and study the pinnacle sets of a simple graph $G$ with $n$ vertices. Given a bijective vertex labeling $\lambda\,:\,V(G)\rightarrow [n]$, the label $\lambda(v)$ of vertex $v$ is a pinnacle of $(G, \lambda)$ if…

Combinatorics · Mathematics 2024-07-01 Chassidy Bozeman , Christine Cheng , Pamela E. Harris , Stephen Lasinis , Shanise Walker

This work introduces the concept of \emph{upper-critical graphs}, in a complementary way of the conventional (lower)critical graphs: an element $x$ of a graph $G$ is called \emph{critical} if $\chi(G-x)<\chi(G)$. It is said that $G$ is a…

Combinatorics · Mathematics 2011-04-05 Jose Antonio Martin H

An identifying code of a graph is a subset of its vertices such that every vertex of the graph is uniquely identified by the set of its neighbours within the code. We study the edge-identifying code problem, i.e. the identifying code…

Combinatorics · Mathematics 2014-03-19 Florent Foucaud , Sylvain Gravier , Reza Naserasr , Aline Parreau , Petru Valicov