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k-nearest neighbor (k-NN) search is a fundamental primitive in geometry processing and computer graphics. While spatial partitioning structures such as kd-trees are standard, they are often manifold-blind, failing to exploit the intrinsic…

Computational Geometry · Computer Science 2026-05-05 Pengfei Wang , Qinghao Guo , Haisen Zhao , Shiqing Xin , Shuangmin Chen , Changhe Tu , Wenping Wang

Approximate nearest neighbor algorithms are used to speed up nearest neighbor search in a wide array of applications. However, current indexing methods feature several hyperparameters that need to be tuned to reach an acceptable…

Data Structures and Algorithms · Computer Science 2019-04-25 Elias Jääsaari , Ville Hyvönen , Teemu Roos

We propose and study a multi-scale approach to vector quantization. We develop an algorithm, dubbed reconstruction trees, inspired by decision trees. Here the objective is parsimonious reconstruction of unsupervised data, rather than…

Machine Learning · Computer Science 2019-09-05 Enrico Cecini , Ernesto De Vito , Lorenzo Rosasco

We present a new algorithm for the approximate near neighbor problem that combines classical ideas from group testing with locality-sensitive hashing (LSH). We reduce the near neighbor search problem to a group testing problem by…

Data Structures and Algorithms · Computer Science 2021-06-23 Joshua Engels , Benjamin Coleman , Anshumali Shrivastava

In this paper we revisit the kernel density estimation problem: given a kernel $K(x, y)$ and a dataset of $n$ points in high dimensional Euclidean space, prepare a data structure that can quickly output, given a query $q$, a…

Data Structures and Algorithms · Computer Science 2020-11-16 Moses Charikar , Michael Kapralov , Navid Nouri , Paris Siminelakis

We present an algorithm for neighbor search in molecular simulations on graphics processing units (GPUs) based on bounding volume hierarchies (BVHs). The BVH is compressed into a low-precision, quantized representation to increase the BVH…

Given a set $\mathsf{P}$ of $n$ points in $\mathbb{R}^d$, we show how to insert a set $\mathsf{X}$ of $O( n^{1-1/d} )$ additional points, such that $\mathsf{P}$ can be broken into two sets $\mathsf{P}_1$ and $\mathsf{P}_2$, of roughly equal…

Computational Geometry · Computer Science 2014-06-17 Vijay V. S. P. Bhattiprolu , Sariel Har-Peled

A large spectrum of applications such as location based services and environmental monitoring demand efficient query processing on uncertain databases. In this paper, we propose the probabilistic Voronoi diagram (PVD) for processing moving…

Databases · Computer Science 2011-06-30 Mohammed Eunus Ali , Egemen Tanin , Rui Zhang , Ramamohanarao Kotagiri

K-nearest neighbor (kNN) search has wide applications in many areas, including data mining, machine learning, statistics and many applied domains. Inspired by the success of ensemble methods and the flexibility of tree-based methodology, we…

Machine Learning · Statistics 2020-05-27 Donghui Yan , Yingjie Wang , Jin Wang , Honggang Wang , Zhenpeng Li

We propose a nearest neighbor based clustering algorithm that results in a naturally defined hierarchy of clusters. In contrast to the agglomerative and divisive hierarchical clustering algorithms, our approach is not dependent on the…

Data Structures and Algorithms · Computer Science 2022-03-16 Kaan Gokcesu , Hakan Gokcesu

We propose a family of very efficient hierarchical indexing schemes for ungapped, score matrix-based similarity search in large datasets of short (4-12 amino acid) protein fragments. This type of similarity search has importance in both…

Data Structures and Algorithms · Computer Science 2007-09-04 Aleksandar Stojmirovic , Vladimir Pestov

Suppose $V$ is an $n$-element set where for each $x \in V$, the elements of $V \setminus \{x\}$ are ranked by their similarity to $x$. The $K$-nearest neighbor graph is a directed graph including an arc from each $x$ to the $K$ points of $V…

Combinatorics · Mathematics 2020-12-29 Jacob D. Baron , R. W. R. Darling

Motivated by applications in computer vision and databases, we introduce and study the Simultaneous Nearest Neighbor Search (SNN) problem. Given a set of data points, the goal of SNN is to design a data structure that, given a collection of…

Data Structures and Algorithms · Computer Science 2016-04-11 Piotr Indyk , Robert Kleinberg , Sepideh Mahabadi , Yang Yuan

K-nearest neighbor classification algorithm is one of the most basic algorithms in machine learning, which determines the sample's category by the similarity between samples. In this paper, we propose a quantum K-nearest neighbor…

Quantum Physics · Physics 2023-04-03 Jing Li , Song Lin , Yu Kai , Gongde Guo

Modern approaches for fast retrieval of similar vectors on billion-scaled datasets rely on compressed-domain approaches such as binary sketches or product quantization. These methods minimize a certain loss, typically the mean squared error…

Computer Vision and Pattern Recognition · Computer Science 2022-02-23 Kenza Amara , Matthijs Douze , Alexandre Sablayrolles , Hervé Jégou

Approximate nearest-neighbor search is a fundamental algorithmic problem that continues to inspire study due its essential role in numerous contexts. In contrast to most prior work, which has focused on point sets, we consider…

Computational Geometry · Computer Science 2021-04-01 Ahmed Abdelkader , David M. Mount

Developing increasingly efficient and accurate algorithms for approximate nearest neighbor search is a paramount goal in modern information retrieval. A primary approach to addressing this question is clustering, which involves partitioning…

Information Retrieval · Computer Science 2024-12-10 Thomas Vecchiato

This paper addresses the nearest neighbor search problem under inner product similarity and introduces a compact code-based approach. The idea is to approximate a vector using the composition of several elements selected from a source…

Computer Vision and Pattern Recognition · Computer Science 2014-06-23 Chao Du , Jingdong Wang

Gadget3 is nowadays one of the most frequently used high performing parallel codes for cosmological hydrodynamical simulations. Recent analyses have shown t\ hat the Neighbour Search process of Gadget3 is one of the most time-consuming…

Instrumentation and Methods for Astrophysics · Physics 2018-11-07 Antonio Ragagnin , Nikola Tchipev , Michael Bader , Klaus Dolag , Nicolay J. Hammer

Nearest neighbor search is a problem of finding the data points from the database such that the distances from them to the query point are the smallest. Learning to hash is one of the major solutions to this problem and has been widely…

Computer Vision and Pattern Recognition · Computer Science 2017-04-25 Jingdong Wang , Ting Zhang , Jingkuan Song , Nicu Sebe , Heng Tao Shen