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The thermodynamic behavior and structural properties of hydrophobic-polar (HP) lattice proteins interacting with attractive surfaces are studied by means of Wang-Landau sampling. Three benchmark HP sequences (48mer, 67mer, and 103mer) are…

Soft Condensed Matter · Physics 2013-01-16 Ying Wai Li , Thomas Wüst , David P. Landau

We study simple lattice systems to demonstrate the influence of interpenetrating bond networks on phase behavior. We promote interpenetration by using a Hamiltonian with a weakly repulsive interaction with nearest neighbors and an…

Soft Condensed Matter · Physics 2014-11-03 Chia Wei Hsu , Francis W. Starr

We use density functional theory to investigate adsorption of liquid mixtures on solid surfaces modified with end-grafted chains. The chains are modelled as freely joined spheres. The fluid molecules are spherical. All spherical species…

Soft Condensed Matter · Physics 2016-03-08 M. Borówko , T. Staszewski

A beam experiment is presented to study heterogeneous reactions relevant to plasma-surface interactions. Atom and ion beams are focused onto the sample to expose it to quantified beams of oxygen, nitrogen, hydrogen, noble gas ions and metal…

Low-energy structures of a hybrid system consisting of a polymer and an attractive nanowire substrate as well as the thermodynamics of the adsorption transition are studied by means of Monte Carlo computer simulations. Depending on…

Soft Condensed Matter · Physics 2011-07-05 Thomas Vogel , Michael Bachmann

We present a two-way coupled fluid-structure interaction scheme for rigid bodies using a two-population lattice Boltzmann formulation for compressible flows. Arbitrary Lagrangian-Eulerian formulation of the discrete Boltzmann equation on…

Fluid Dynamics · Physics 2021-11-03 Abhimanyu Bhadauria , Benedikt Dorschner , Ilya Karlin

We consider a system of trimers and monomers on the triangular lattice, which describes the adsorption problem on (111) $1 \times 1$ surface of diamond structure. We give a mapping to a 3-state vertex model on the square lattice. We treat…

Statistical Mechanics · Physics 2019-03-26 Noriko Akutsu , Yasuhiro Akutsu

A novel coupled level-set lattice Boltzmann method on adaptive Cartesian grids for simulating liquid-gas multiphase flows is presented. The approach addresses the inherent challenges of accurately modeling multiphase systems characterized…

Fluid Dynamics · Physics 2026-01-12 Julian Vorspohl , Yuxing Peng , Matthias Meinke , Dominik Krug , Wolfgang Schröder

A first-principle multiscale modeling approach is presented, which is derived from the solution of the Ornstein-Zernike equation for the coarse-grained representation of polymer liquids. The approach is analytical, and for this reason is…

Soft Condensed Matter · Physics 2009-09-09 J. McCarty , I. Y. Lyubimov , M. G. Guenza

We introduce and implement a Monte Carlo scheme to study the equilibrium statistics of polymers in the globular phase. It is based on a model of "interacting elastic lattice polymers" and allows a sufficiently good sampling of long and…

Statistical Mechanics · Physics 2014-06-25 M. Baiesi , E. Orlandini

The adsorption kinetics of the cationic surfactant dodecyltrimethylammonium bromide at the air-water interface has been studied by the maximum bubble pressure method at concentrations below the critical micellar concentration. At short…

Soft Condensed Matter · Physics 2011-03-25 Hernan Ritacco , Dominique Langevin , Haim Diamant , David Andelman

We develop a mesoscopic lattice Boltzmann model for liquid-vapor phase transition by handling the microscopic molecular interaction. The short-range molecular interaction is incorporated by recovering an equation of state for dense gases,…

Fluid Dynamics · Physics 2021-06-30 Rongzong Huang , Huiying Wu , Nikolaus A. Adams

We study the phase transition behavior of a frustrated Heisenberg model on a stacked triangular lattice by Monte Carlo simulations. The model has three types of interactions: the ferromagnetic nearest-neighbor interaction $J_1$ and…

Statistical Mechanics · Physics 2013-11-28 Ryo Tamura , Shu Tanaka

The Embedded-Atom Model (EAM) provides a phenomenological description of atomic arrangements in metallic systems. It consists of a configurational energy depending on atomic positions and featuring the interplay of two-body atomic…

Mathematical Physics · Physics 2021-09-01 Laurent Bétermin , Manuel Friedrich , Ulisse Stefanelli

Understanding the phase behaviour of pheromones and other messaging molecules remains a significant and largely unexplored challenge, even though it plays a central role in chemical communication. Here, we present all-atom molecular…

Soft Condensed Matter · Physics 2025-12-05 Ludovic Jami , Bertrand Siboulet , Thomas Zemb , Jérôme Casas , Jean-François Dufrêche

We analyze the possible phase diagrams of a simple model for an associating liquid proposed previously. Our two-dimensional lattice model combines oreintati onal ice-like interactions and \"{}Van der Waals\"{} interactions which may be…

Soft Condensed Matter · Physics 2009-11-11 Vera B. Henriques , Nara Guisoni , Marco Aurelio Barbosa , Marcelo Thielo , Marcia C. Barbosa

The BCS-BEC crossover in a lattice is a powerful paradigm to understand how a superconductor deviates from the Bardeen-Cooper-Schrieffer physics as the attractive interaction increases. Optical lattices loaded with binary mixtures of cold…

Strongly Correlated Electrons · Physics 2014-05-15 A. Amaricci , A. Privitera , M. Capone

Microscopic models of reaction-diffusion processes on the cell membrane can link local spatiotemporal effects to macroscopic self-organized patterns often observed on the membrane. Simulation schemes based on the microscopic lattice method…

Subcellular Processes · Quantitative Biology 2019-04-24 Wei-Xiang Chew , Kazunari Kaizu , Masaki Watabe , Sithi V. Muniandy , Koichi Takahashi , Satya N. V. Arjunan

The adsorption of mixtures of charged polymers onto solid surfaces presents a big interest in different technological and industrial fields, and in particular, in cosmetics. This requires to deepen on the most fundamental physico-chemical…

We consider in this review the statistical mechanical description of a very general microscopic lattice model of a compressible and interacting multi-component mixture of linear polymers of fixed lengths. The model contains several…

Materials Science · Physics 2007-05-23 P. D. Gujrati