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We present a novel method for graph partitioning, based on reinforcement learning and graph convolutional neural networks. Our approach is to recursively partition coarser representations of a given graph. The neural network is implemented…

Machine Learning · Computer Science 2021-06-30 Alice Gatti , Zhixiong Hu , Tess Smidt , Esmond G. Ng , Pieter Ghysels

When solving partial differential equations (PDEs) using finite difference or finite element methods, efficient solvers are required for handling large sparse linear systems. In this paper, a recursive sparse LU decomposition for matrices…

Numerical Analysis · Mathematics 2024-08-27 Zhu Xuanru , Lai Jun

Even distribution of irregular workload to processing units is crucial for efficient parallelization in many applications. In this work, we are concerned with a spatial partitioning called rectilinear partitioning (also known as generalized…

Data Structures and Algorithms · Computer Science 2020-09-17 Abdurrahman Yaşar , Muhammed Fatih Balin , Xiaojing An , Kaan Sancak , Ümit V. Çatalyürek

Partitioning graphs into blocks of roughly equal size such that few edges run between blocks is a frequently needed operation in processing graphs. Recently, size, variety, and structural complexity of these networks has grown dramatically.…

Data Structures and Algorithms · Computer Science 2018-10-16 Yaroslav Akhremtsev , Peter Sanders , Christian Schulz

Partitioning graphs into blocks of roughly equal size such that few edges run between blocks is a frequently needed operation when processing graphs on a parallel computer. When a topology of a distributed system is known an important task…

Data Structures and Algorithms · Computer Science 2020-01-23 Marcelo Fonseca Faraj , Alexander van der Grinten , Henning Meyerhenke , Jesper Larsson Träff , Christian Schulz

We present a distributed-memory library for computations with dense structured matrices. A matrix is considered structured if its off-diagonal blocks can be approximated by a rank-deficient matrix with low numerical rank. Here, we use…

Mathematical Software · Computer Science 2015-06-29 François-Henry Rouet , Xiaoye S. Li , Pieter Ghysels , Artem Napov

We present a fast randomized algorithm that computes a low rank LU decomposition. Our algorithm uses random projections type techniques to efficiently compute a low rank approximation of large matrices. The randomized LU algorithm can be…

Numerical Analysis · Mathematics 2016-02-02 Gil Shabat , Yaniv Shmueli , Yariv Aizenbud , Amir Averbuch

Generalized sparse matrix-matrix multiplication is a key primitive for many high performance graph algorithms as well as some linear solvers such as multigrid. We present the first parallel algorithms that achieve increasing speedups for an…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-08-09 Aydın Buluç , John R. Gilbert

The graph partitioning problem has many applications in scientific computing such as computer aided design, data mining, image compression and other applications with sparse-matrix vector multiplications as a kernel operation. In many cases…

Data Structures and Algorithms · Computer Science 2016-01-08 Foad Lotfifar , Matthew Johnson

We consider the problem of developing an efficient multi-threaded implementation of the matrix-vector multiplication algorithm for sparse matrices with structural symmetry. Matrices are stored using the compressed sparse row-column format…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-05-18 Vicente H. F. Batista , George O. Ainsworth , Fernando L. B. Ribeiro

We have repurposed Google Tensor Processing Units (TPUs), application-specific chips developed for machine learning, into large-scale dense linear algebra supercomputers. The TPUs' fast inter-core interconnects (ICI)s, physically…

Computational Physics · Physics 2022-09-14 Adam G. M. Lewis , Jackson Beall , Martin Ganahl , Markus Hauru , Shrestha Basu Mallick , Guifre Vidal

This paper presents an efficient technique for matrix-vector and vector-transpose-matrix multiplication in distributed-memory parallel computing environments, where the matrices are unstructured, sparse, and have a substantially larger…

Mathematical Software · Computer Science 2018-12-04 Jonathan Eckstein , Gyorgy Matyasfalvi

Partitioning sparse matrices and graphs is a common and important problem in many scientific and graph analytics applications. In this work, we are concerned with a spatial partitioning called rectilinear partitioning (also known as…

Data Structures and Algorithms · Computer Science 2020-01-01 Abdurrahman Yaşar , Ümit V. Çatalyürek

A fast algorithm for the approximation of a low rank LU decomposition is presented. In order to achieve a low complexity, the algorithm uses sparse random projections combined with FFT-based random projections. The asymptotic approximation…

Numerical Analysis · Mathematics 2016-01-19 Yariv Aizenbud , Gil Shabat , Amir Averbuch

We propose different implementations of the sparse matrix--dense vector multiplication (\spmv{}) for finite fields and rings $\Zb/m\Zb$. We take advantage of graphic card processors (GPU) and multi-core architectures. Our aim is to improve…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-09-09 Brice Boyer , Jean-Guillaume Dumas , Pascal Giorgi

We present a sparse linear system solver that is based on a multifrontal variant of Gaussian elimination, and exploits low-rank approximation of the resulting dense frontal matrices. We use hierarchically semiseparable (HSS) matrices, which…

Mathematical Software · Computer Science 2015-02-27 Pieter Ghysels , Xiaoye S. Li , Francois-Henry Rouet , Samuel Williams , Artem Napov

Inversion of sparse matrices with standard direct solve schemes is robust, but computationally expensive. Iterative solvers, on the other hand, demonstrate better scalability; but, need to be used with an appropriate preconditioner (e.g.,…

Numerical Analysis · Mathematics 2017-09-28 Hadi Pouransari , Pieter Coulier , Eric Darve

In this paper we describe a parallel Gaussian elimination algorithm for matrices with entries in a finite field. Unlike previous approaches, our algorithm subdivides a very large input matrix into smaller submatrices by subdividing both…

Rings and Algebras · Mathematics 2018-06-13 Stephen Linton , Gabriele Nebe , Alice Niemeyer , Richard Parker , Jon Thackray

Ordering vertices of a graph is key to minimize fill-in and data structure size in sparse direct solvers, maximize locality in iterative solvers, and improve performance in graph algorithms. Except for naturally parallelizable ordering…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-10-27 Ariful Azad , Mathias Jacquelin , Aydin Buluc , Esmond G. Ng

The symmetric sparse matrix-vector multiplication (SymmSpMV) is an important building block for many numerical linear algebra kernel operations or graph traversal applications. Parallelizing SymmSpMV on today's multicore platforms with up…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-30 Christie L. Alappat , Georg Hager , Olaf Schenk , Jonas Thies , Achim Basermann , Alan R. Bishop , Holger Fehske , Gerhard Wellein
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