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This paper presents a methodology for designing a containerized and distributed open science infrastructure to simplify its reusability, replicability, and portability in different environments. The methodology is depicted in a step-by-step…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-09-19 Giuseppe Grieco , Ivan Heibi , Arcangelo Massari , Arianna Moretti , Silvio Peroni

As scientific work becomes more computational and data intensive, research processes and results become more difficult to interpret and reproduce. In this poster, we show how the Jupyter notebook, a tool originally designed as a free…

Digital Libraries · Computer Science 2018-04-17 Bernadette M. Boscoe , Irene V. Pasquetto , Milena S. Golshan , Christine L. Borgman

To reproduce eScience, several challenges need to be solved: scientific workflows need to be automated; the involved software versions need to be provided in an unambiguous way; input data needs to be easily accessible; High-Performance…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-01-30 Kessy Abarenkov , Anne Fouilloux , Helmut Neukirchen , Abdulrahman Azab

At the intersection of what I call uncomputable art and computational epistemology, a form of experimental philosophy, we find an exciting and promising area of science related to causation with an alternative, possibly best possible,…

Other Computer Science · Computer Science 2021-09-20 Hector Zenil

Current concerns about reproducibility in many research communities can be traced back to a high value placed on empirical reproducibility of the physical details of scientific experiments and observations. For example, the detailed…

History and Overview · Mathematics 2019-07-19 Charles T. Gray , Ben Marwick

Our analysis of recent AI4H publications reveals that, despite a trend toward utilizing open datasets and sharing modeling code, 74% of AI4H papers still rely on private datasets or do not share their code. This is especially concerning in…

Computers and Society · Computer Science 2026-03-05 John Wu , Zhenbang Wu , Jimeng Sun

Replication packages are crucial for enabling transparency, validation, and reuse in software engineering (SE) research. While artifact sharing is now a standard practice and even expected at premier SE venues such as ICSE, the practical…

Software Engineering · Computer Science 2026-03-24 Al Muttakin , Saikat Mondal , Chanchal K. Roy

The fact that the number of users of open source software (OSS) is practically un-limited and that ultimately the software quality is determined by end users experience, makes the usability an even more critical quality attribute than it is…

Software Engineering · Computer Science 2015-07-27 Arif Raza , Luiz Fernando Capretz

Improved software discovery is a prerequisite for greater software reuse: after all, if someone cannot find software for a particular task, they cannot reuse it. Understanding people's approaches and preferences when they look for software…

Computers and Society · Computer Science 2018-05-30 Michael Hucka , Matthew J. Graham

Modern software development methodologies include reuse of open source code. Reuse can be facilitated by architectural knowledge of the software, not necessarily provided in the documentation of open source software. The effort required to…

Software Engineering · Computer Science 2011-10-11 Eleni Constantinou , George Kakarontzas , Ioannis Stamelos

We present OpenML and mldata, open science platforms that provides easy access to machine learning data, software and results to encourage further study and application. They go beyond the more traditional repositories for data sets and…

Machine Learning · Computer Science 2014-02-26 Joaquin Vanschoren , Mikio L. Braun , Cheng Soon Ong

The reproducibility of scientific articles is central to the advancement of science. Despite this importance, evaluating reproducibility remains challenging due to the scarcity of ground truth data. Predictive models can address this…

Digital Libraries · Computer Science 2024-10-25 Akhil Pandey Akella , Sagnik Ray Choudhury , David Koop , Hamed Alhoori

Data analysis in fundamental sciences nowadays is an essential process that pushes frontiers of our knowledge and leads to new discoveries. At the same time we can see that complexity of those analyses increases fast due to a)~enormous…

Data Analysis, Statistics and Probability · Physics 2016-01-20 Tatiana Likhomanenko , Alex Rogozhnikov , Alexander Baranov , Egor Khairullin , Andrey Ustyuzhanin

Scientific workflows are becoming increasingly popular for compute-intensive and data-intensive scientific applications. The vision and promise of scientific workflows includes rapid, easy workflow design, reuse, scalable execution, and…

Databases · Computer Science 2013-11-26 Víctor Cuevas-Vicenttín , Saumen Dey , Sven Köhler , Sean Riddle , Bertram Ludäscher

This paper proposes an interactive repository type for research software metadata which measures and documents software sustainability by accumulating metadata, and computing sustainability metrics over them. Such a repository would help to…

Software Engineering · Computer Science 2016-08-18 Stephan Druskat

Obviously, the dynamism of software reliability research has speeded up significantly in the last period, and we can state the fact that its intensity is approaching, and in some cases is ahead of the information systems hardware…

Software Engineering · Computer Science 2020-03-06 Anton Petrov , Elena Popova , Alexander Petrov

Background: The development of scientific software applications is far from trivial, due to the constant increase in the necessary complexity of these applications, their increasing size, and their need for intensive maintenance and reuse.…

Software Engineering · Computer Science 2020-10-21 Elvira-Maria Arvanitou , Apostolos Ampatzoglou , Alexander Chatzigeorgiou , Jeffrey C. Carver

Reproducibility of computational research is critical for ensuring transparency, reliability and reusability. Challenges with computational reproducibility have been documented in several fields, but healthcare discrete-event simulation…

Other Quantitative Biology · Quantitative Biology 2025-09-17 Amy Heather , Thomas Monks , Alison Harper , Navonil Mustafee , Andrew Mayne

Background: Research software plays an important role in solving real-life problems, empowering scientific innovations, and handling emergency situations. Therefore, the correctness and trustworthiness of research software are of absolute…

Software Engineering · Computer Science 2022-07-27 Nasir U. Eisty , Jeffrey C. Carver

Human creativity is the ultimate driving force behind scientific progress. While the building blocks of innovations are often embodied in existing knowledge, it is creativity that blends seemingly disparate ideas. Existing studies have made…

Social and Information Networks · Computer Science 2016-12-06 Xinyang Zhang , Dashun Wang , Ting Wang
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