Related papers: Chaos in DNA inversions (Draft paper)
The long time dynamics of the conformational transition from B-DNA to Z-DNA is shown to undergo a dynamic phase transition. We obtained the dynamic phase diagram for the stability of the front separating B and Z. The instability in this…
We study numerically a disordered version of the model for DNA denaturation transition (DSAW-DNA) consisting of two interacting SAWs in 3d, which undergoes a first order transition in the homogeneous case. The two possible values eAT and…
Biological information processing is often carried out by complex networks of interconnected dynamical units. A basic question about such networks is that of reliability: if the same signal is presented many times with the network in…
It is shown that a periodic perturbation of the quantum pendulum (similarly to the classical one) in the neighbourhood of the separatrix can bring about irreversible phenomena. As a result of recurrent passages between degenerate states,…
The crossing of a transition state in a multidimensional reactive system is mediated by invariant geometric objects in phase space: An invariant hyper-sphere that represents the transition state itself and invariant hyper-cylinders that…
We study the interplay between regular and chaotic dynamics at the critical point of a generic first-order quantum phase transition in an interacting boson model of nuclei. A classical analysis reveals a distinct behavior of the coexisting…
Chaos is an active research subject in the fields of science in recent years. it is a complex and an erratic behavior that is possible in very simple systems. in the present day, the chaotic behavior can be observed in experiments. Many…
A probability model exhibits instability if small changes in a data outcome result in large, and often unanticipated, changes in probability. This instability is a property of the probability model, given by a distributional form and a…
Dynamical chaos has recently been shown to exist in the Gaussian approximation in quantum mechanics and in the self-consistent mean field approach to studying the dynamics of quantum fields. In this study, we first show that any variational…
A type of chaos called laminar chaos was found in singularly perturbed dynamical systems with periodically [Phys. Rev. Lett. 120, 084102 (2018)] and quasiperiodically [Phys. Rev. E 107, 014205 (2023)] time-varying delay. Compared to…
Infiltration of diffusing particles from one material to another where the diffusion mechanism is either normal or anomalous is a widely observed phenomena. When the diffusion is anomalous we find interesting behaviors: diffusion may lead…
What is chaos? Despite several decades of research on this ubiquitous and fundamental phenomenon there is yet no agreed-upon answer to this question. Recently, it was realized that all stochastic and deterministic differential equations,…
We show that the output of systems with time-varying delay can exhibit a new kind of chaotic behavior characterized by laminar phases, which are periodically interrupted by irregular bursts. Within each laminar phase the output intensity…
The transmission of information can couple two entities of very different nature, one of them serving as a memory for the other. Here we study the situation in which information is stored in a wave field and serves as a memory that pilots…
Chromosomal rearrangements, which shuffle DNA throughout the genome, are an important source of divergence across taxa. Using a paired-end read approach with Illumina sequence data for archaic humans, I identify changes in genome structure…
A recent quasiclassical description of a tunneling universe model is shown to exhibit chaotic dynamics by an analysis of fractal dimensions in the plane of initial values. This result relies on non-adiabatic features of the quantum…
A simple experiment using radioactive decay is proposed to test the possibility of a determinsistic, but chaotic, origin of quantum mechanical randomness.
Experiments have revealed correlation-driven behavior of DNA in charged solutions, including charge inversion and condensation. This paper presents calculations of a lattice-gas model of charge inversion for the adsorption of charged dimers…
We extended a previous qualitative study of the intermittent behaviour of a chaotical nucleonic system, by adding a few quantitative analyses: of the configuration and kinetic energy spaces, power spectra, Shannon entropies, and Lyapunov…
We present numerical simulation results of driven vortex lattices in presence of random disorder at zero temperature. We show that the plastic dynamics is readily understood in the framework of chaos theory. Intermittency "routes to chaos"…