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Biomedical networks (or graphs) are universal descriptors for systems of interacting elements, from molecular interactions and disease co-morbidity to healthcare systems and scientific knowledge. Advances in artificial intelligence,…

Machine Learning · Computer Science 2025-02-07 Michelle M. Li , Kexin Huang , Marinka Zitnik

Many real-world complex systems, such as epidemic spreading networks and ecosystems, can be modeled as networked dynamical systems that produce multivariate time series. Learning the intrinsic dynamics from observational data is pivotal for…

Machine Learning · Computer Science 2024-12-30 Yanna Ding , Zijie Huang , Malik Magdon-Ismail , Jianxi Gao

We propose an adaptive control protocol for identifying the topology of dynamical networks interconnected over undirected graphs with cooperative and antagonistic interactions. The signed network is modeled using a repelling Laplacian.…

Systems and Control · Electrical Eng. & Systems 2026-04-13 Pelin Sekercioglu , Nana Wang , Angela Fontan , Dimos V. Dimarogonas

The study of temporal networks is motivated by the simple and important observation that just as network structure can affect dynamics, so can structure in time. Just as network topology can teach us about the system in question, so can its…

Physics and Society · Physics 2021-03-26 Petter Holme , Jari Saramäki

The language of graph theory, or network science, has proven to be an exceptional tool for addressing myriad problems in neuroscience. Yet, the use of networks is predicated on a critical simplifying assumption: that the quintessential unit…

Neurons and Cognition · Quantitative Biology 2016-01-14 Chad Giusti , Robert Ghrist , Danielle S. Bassett

We develop a new framework for modeling innovation networks which evolve over time. The nodes in the network represent firms, whereas the directed links represent unilateral interactions between the firms. Both nodes and links evolve…

Physics and Society · Physics 2007-12-18 Michael D. Koenig , Stefano Battiston , Frank Schweitzer

The structure of large-scale social networks has predominantly been articulated using generative models, a form of average-case analysis. This chapter surveys recent proposals of more robust models of such networks. These models posit…

Data Structures and Algorithms · Computer Science 2020-08-03 Tim Roughgarden , C. Seshadhri

Symbolic models have recently spurred the interest of the research community because they offer a correct-by-design approach to the control of embedded and cyber-physical systems. In this paper we address construction of symbolic models for…

Optimization and Control · Mathematics 2014-08-15 Giordano Pola , Pierdomenico Pepe , Maria Domenica Di Benedetto

Battiston et al. (arXiv:2110.06023) provide a comprehensive overview of how investigations of complex systems should take into account interactions between more than two elements, which can be modelled by hypergraphs and studied via…

We modify the Pearce-Kelly algorithm that maintains a topological ordering for a directed acyclic graph in order to allow cycles to be tolerated. Cycles make topological orderings moot, of course, however tolerating them is useful in…

Data Structures and Algorithms · Computer Science 2023-06-12 James Smith

Positional and relational perspectives on network data have led to two different research traditions in textual analysis and social network analysis, respectively. Latent Semantic Analysis (LSA) focuses on the latent dimensions in textual…

Computers and Society · Computer Science 2016-08-16 Loet Leydesdorff

Many "good" topologies for interconnection networks are based on line digraphs of regular digraphs. These digraphs support unitary matrices. We propose the property "being the digraph of a unitary matrix" as additional criterion for the…

Discrete Mathematics · Computer Science 2007-05-23 Simone Severini

Learning a graph topology to reveal the underlying relationship between data entities plays an important role in various machine learning and data analysis tasks. Under the assumption that structured data vary smoothly over a graph, the…

Machine Learning · Statistics 2023-08-23 Xingyue Pu , Tianyue Cao , Xiaoyun Zhang , Xiaowen Dong , Siheng Chen

A correspondence is established between the elements of logic reasoning systems (knowledge bases, rules, inference and queries) and the hardware and dynamical operations of neural networks. The correspondence is framed as a general…

Disordered Systems and Neural Networks · Physics 2007-05-23 Joao Martins , R. Vilela Mendes

The topology of any complex system is key to understanding its structure and function. Fundamentally, algebraic topology guarantees that any system represented by a network can be understood through its closed paths. The length of each path…

Methodology · Statistics 2017-05-17 Pierre-André G. Maugis , Sofia C. Olhede , Patrick J. Wolfe

Many physical, biological, and social phenomena can be described by cascades taking place on a network. Often, the activity can be empirically observed, but not the underlying network of interactions. In this paper we offer three…

Social and Information Networks · Computer Science 2017-07-24 Sushrut Ghonge , Dervis Can Vural

The authorship attribution is a problem of considerable practical and technical interest. Several methods have been designed to infer the authorship of disputed documents in multiple contexts. While traditional statistical methods based…

Computation and Language · Computer Science 2018-03-28 Jeaneth Machicao , Edilson A. Corrêa , Gisele H. B. Miranda , Diego R. Amancio , Odemir M. Bruno

Network Science provides a universal formalism for modelling and studying complex systems based on pairwise interactions between agents. However, many real networks in the social, biological or computer sciences involve interactions among…

Social and Information Networks · Computer Science 2020-06-24 Daniel Hernández Serrano , Juan Hernández Serrano , Darío Sánchez Gómez

There is a deep and interesting connection between the topological properties of a graph and the behaviour of the dynamical system defined on it. We analyse various kind of graphs, with different contrasting connectivity or degree…

Combinatorics · Mathematics 2017-05-01 Barbara Giunti , Vincenzo Perri

Although two-dimensional periodic structures have functioned as the primary platform for exploring topological phenomena, recent advances have substantially expanded this research boundary to include more intricate, aperiodic structures:…

Mesoscale and Nanoscale Physics · Physics 2026-03-12 Sunkyu Yu , Xianji Piao , Namkyoo Park
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