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Networks are a general language for representing relational information among objects. An effective way to model, reason about, and summarize networks, is to discover sets of nodes with common connectivity patterns. Such sets are commonly…

Social and Information Networks · Computer Science 2014-01-30 Jaewon Yang , Julian McAuley , Jure Leskovec

Comparing the internal representations of neural networks is a central goal in both neuroscience and machine learning. Standard alignment metrics operate on raw neural activations, implicitly assuming that similar representations produce…

Machine Learning · Computer Science 2026-04-02 Sunny Liu , Habon Issa , André Longon , Liv Gorton , Meenakshi Khosla , David Klindt

Many networks in nature, society and technology are characterized by a mesoscopic level of organization, with groups of nodes forming tightly connected units, called communities or modules, that are only weakly linked to each other.…

Physics and Society · Physics 2009-03-11 Andrea Lancichinetti , Santo Fortunato , Janos Kertesz

Many real life queueing networks have finite buffers with overflows. To understand the behavior of such networks, we consider traffic equations that generalize the traffic equations of classic open queueing networks where some nodes are…

Optimization and Control · Mathematics 2020-12-11 S. Fleuren , H. M. Jansen , E. Lefeber , Y. Nazarathy

Complex networks are universal, arising in fields as disparate as sociology, physics, and biology. In the past decade, extensive research into the properties and behaviors of complex systems has uncovered surprising commonalities among the…

Other Quantitative Biology · Quantitative Biology 2015-06-26 Claire Christensen , Reka Albert

Compositionality is a key strategy for addressing combinatorial complexity and the curse of dimensionality. Recent work has shown that compositional solutions can be learned and offer substantial gains across a variety of domains, including…

Machine Learning · Computer Science 2019-04-30 Clemens Rosenbaum , Ignacio Cases , Matthew Riemer , Tim Klinger

High-throughput techniques are leading to an explosive growth in the size of biological databases and creating the opportunity to revolutionize our understanding of life and disease. Interpretation of these data remains, however, a major…

Molecular Networks · Quantitative Biology 2009-11-11 Roger Guimera , Luis A. Nunes Amaral

Despite the fact that many important problems (including clustering) can be described using hypergraphs, theoretical foundations as well as practical algorithms using hypergraphs are not well developed yet. In this paper, we propose a…

Combinatorics · Mathematics 2020-07-01 Bogumil Kaminski , Valerie Poulin , Pawel Pralat , Przemyslaw Szufel , Francois Theberge

We present a compact matrix formulation of the modularity, a commonly used quality measure for the community division in a network. Using this formulation we calculate the density of modularities, a statistical measure of the probability of…

Statistical Mechanics · Physics 2016-08-16 Erik Holmström , Nicolas Bock , Johan Brännlund

Unreliable network data can cause community-detection methods to overfit and highlight spurious structures with misleading information about the organization and function of complex systems. Here we show how to detect significant flow-based…

Physics and Society · Physics 2020-07-09 Jelena Smiljanić , Daniel Edler , Martin Rosvall

In this paper we raise the question of how to compress sparse graphs. By introducing the idea of redundancy, we find a way to measure the overlap of neighbors between nodes in networks. We exploit symmetry and information by making use of…

Statistical Mechanics · Physics 2015-04-01 Jie Sun , Erik M. Bollt , Daniel ben-Avraham

Interpreting graph neural networks (GNNs) is difficult because message passing mixes signals and internal channels rarely align with human concepts. We study superposition, the sharing of directions by multiple features, directly in the…

Machine Learning · Computer Science 2026-01-19 Lukas Pertl , Han Xuanyuan , Pietro Liò

We present elements of a typing theory for flow networks, where "types", "typings", and "type inference" are formulated in terms of familiar notions from polyhedral analysis and convex optimization. Based on this typing theory, we develop…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-05-22 Assaf Kfoury

Most existing approaches for community detection require complete information of the graph in a specific scale, which is impractical for many social networks. We propose a novel algorithm that does not embrace the universal approach but…

Physics and Society · Physics 2015-03-30 Hui-Jia Li , Junhua Zhang , Zhi-Ping Liu , Luonan Chen , Xiang-Sun Zhang

The detection of overlapping communities is a challenging problem which is gaining increasing interest in recent years because of the natural attitude of individuals, observed in real-world networks, to participate in multiple groups at the…

Social and Information Networks · Computer Science 2014-11-17 Alessia Amelio , Clara Pizzuti

We introduce an easily computable topological measure which locates the effective crossover between segregation and integration in a modular network. Segregation corresponds to the degree of network modularity, while integration is…

Adaptation and Self-Organizing Systems · Physics 2012-06-18 A. Ajdari Rad , I. Sendiña-Nadal , D. Papo , M. Zanin , J. M. Buldú , F. del Pozo , S. Boccaletti

Many real-world complex networks exhibit a community structure, in which the modules correspond to actual functional units. Identifying these communities is a key challenge for scientists. A common approach is to search for the network…

Physics and Society · Physics 2016-12-22 Federico Botta , Charo I. del Genio

When analyzing complex networks a key target is to uncover their modular structure, which means searching for a family of modules, namely node subsets spanning each a subnetwork more densely connected than the average. This work proposes a…

Discrete Mathematics · Computer Science 2018-09-10 Giovanni Rossi

We propose a method to decompose dynamical systems based on the idea that modules constrain the spread of perturbations. We find partitions of system variables that maximize 'perturbation modularity', defined as the autocovariance of…

Physics and Society · Physics 2022-11-22 Artemy Kolchinsky , Alexander J. Gates , Luis M. Rocha

Random network models, constrained to reproduce specific statistical features, are often used to represent and analyze network data and their mathematical descriptions. Chief among them, the configuration model constrains random networks by…

Social and Information Networks · Computer Science 2025-01-28 Laurent Hébert-Dufresne , Jean-Gabriel Young , Alexander Daniels , Alec Kirkley , Antoine Allard