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High-throughput spectrometers are capable of producing data sets containing thousands of spectra for a single biological sample. These data sets contain a substantial amount of redundancy from peptides that may get selected multiple times…

Data Structures and Algorithms · Computer Science 2013-01-08 Fahad Saeed , Trairak Pisitkun , Mark A. Knepper , Jason D. Hoffert

We describe how a novel online changepoint detection algorithm, called Poisson-FOCuS, can be used to optimally detect gamma-ray bursts within the computational constraints imposed by miniaturized satellites such as the upcoming…

Instrumentation and Methods for Astrophysics · Physics 2023-12-15 Giuseppe Dilillo , Kes Ward , Idris A. Eckley , Paul Fearnhead , Riccardo Crupi , Yuri Evangelista , Andrea Vacchi , Fabrizio Fiore

Controlling the properties of organic/inorganic materials requires detailed knowledge of their molecular adsorption geometries. This is often unattainable, even with current state-of-the-art tools. Visualizing the structure of complex…

Compressive sensing(CS) has drawn much attention in recent years due to its low sampling rate as well as high recovery accuracy. As an important procedure, reconstructing a sparse signal from few measurement data has been intensively…

Information Theory · Computer Science 2018-06-25 Yicong He , Fei Wang , Shiyuan Wang , Badong Chen

Particle production from secondary proton-proton collisions, commonly referred to as pile-up, impair the sensitivity of both new physics searches and precision measurements at LHC experiments. We propose a novel algorithm, PUMA, for…

Instrumentation and Detectors · Physics 2022-11-03 Benedikt Maier , Siddharth M. Narayanan , Gianfranco de Castro , Maxim Goncharov , Christoph Paus , Matthias Schott

We introduce a temporal scheme for data sampling, based on a variable delay between two successive data acquisitions. The scheme is designed so as to reduce the average data flow rate, while still retaining the information on the data…

Soft Condensed Matter · Physics 2016-08-06 A. Philippe , S. Aime , V. Roger , R. Jelinek , G. Prévot , L. Berthier , L. Cipelletti

An algorithm is proposed to calculate traveling dissipative solitons for the FitzHugh-Nagumo equations. It is based on the application of the steepest descent method to a certain functional. This approach can be used to find solitons…

Numerical Analysis · Mathematics 2019-02-14 Yung-Sze Choi , Jeffrey M. Connors

Clustering algorithms fundamentally group data points by characteristics to identify patterns. Over the past two decades, researchers have extended these methods to analyze trajectories of humans, animals, and vehicles, studying their…

Machine Learning · Computer Science 2025-12-17 Atieh Rahmani , Mansoor Davoodi , Justin M. Calabrese

We discuss the distributed matching scheme in accelerators where control of transverse beam phase space, oscillation, and transport is accomplished by flexible distribution of focusing elements beyond dedicated matching sections. Besides…

Accelerator Physics · Physics 2018-08-07 Yu-Chiu Chao

We present a retrieval algorithm based on generalized projections for ultrashort pulse characterization using dispersion scan (d-scan). The new algorithm is tested on several simulated cases and in two different experimental cases in the…

Distributed compressed sensing is concerned with representing an ensemble of jointly sparse signals using as few linear measurements as possible. Two novel joint reconstruction algorithms for distributed compressed sensing are presented in…

Information Theory · Computer Science 2014-05-22 Diego Valsesia , Giulio Coluccia , Enrico Magli

The field of quickest change detection (QCD) concerns design and analysis of algorithms to estimate in real time the time at which an important event takes place and identify properties of the post-change behavior. The goal is to devise a…

Statistics Theory · Mathematics 2024-09-13 Austin Cooper , Sean Meyn

Practical application of the harmonic summing technique in the power-spectrum analysis for searching pulsars has exhibited the technique's effectiveness. In this paper, theoretical verification of harmonic summing considering power's…

Instrumentation and Methods for Astrophysics · Physics 2018-11-20 Meng Yu

This paper deals with Gibbs samplers that include high dimensional conditional Gaussian distributions. It proposes an efficient algorithm that avoids the high dimensional Gaussian sampling and relies on a random excursion along a small set…

Computation · Statistics 2016-04-20 Olivier Féron , François Orieux , Jean-François Giovannelli

The fundamental problem of our interest here is soft-input soft-output multiple-input multiple-output (MIMO) detection. We propose a method, referred to as subspace marginalization with interference suppression (SUMIS), that yields…

Information Theory · Computer Science 2014-02-03 Mirsad Čirkić , Erik G. Larsson

We study the statistical characteristics of a box-fitting algorithm to analyze stellar photometric time series in the search for periodic transits by extrasolar planets. The algorithm searches for signals characterized by a periodic…

Astrophysics · Physics 2016-08-30 G. Kovács , S. Zucker , T. Mazeh

We introduce a path sampling method for the computation of rate constants for systems with a highly diffusive character. Based on the recently developed algorithm of transition interface sampling (TIS) this procedure increases the…

Statistical Mechanics · Physics 2009-11-10 Daniele Moroni , Peter G. Bolhuis , Titus S. van Erp

We introduce a method for detecting astrophysical transients evolving on timescales of milliseconds to minutes using cosmic microwave background (CMB) survey telescopes. While previous transient searches in CMB data operate in map space,…

A method is presented which allows for a tremendous speed-up of computer simulations of statistical systems by orders of magnitude. This speed-up is achieved by means of a new observable, while the algorithm of the simulation remains…

Statistical Mechanics · Physics 2013-05-29 M. Kastner , J. D. Munoz , M. Promberger

Pulsar searches are computationally demanding efforts to discover dispersed periodic signals in time- and frequency-resolved data from radio telescopes. The complexity and computational expense of simultaneously determining the…

Instrumentation and Methods for Astrophysics · Physics 2021-07-14 Lars Künkel , Rajat M. Thomas , Joris P. W. Verbiest
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