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The Maximum Common Subgraph (MCS) problem plays a key role in many applications, including cheminformatics, bioinformatics, and pattern recognition, where it is used to identify the largest shared substructure between two graphs. Although…

Data Structures and Algorithms · Computer Science 2026-03-25 Buddhi Kothalawala , Henning Koehler , Muhammad Farhan

We study the problem of learning a latent tree graphical model where samples are available only from a subset of variables. We propose two consistent and computationally efficient algorithms for learning minimal latent trees, that is, trees…

Machine Learning · Statistics 2010-09-15 Myung Jin Choi , Vincent Y. F. Tan , Animashree Anandkumar , Alan S. Willsky

In the present paper a novel graph-based approach to the shape decomposition problem is addressed. The shape is appropriately transformed into a visibility graph enriched with local neighborhood information. A two-step diffusion process is…

Computer Vision and Pattern Recognition · Computer Science 2017-09-13 Foteini Fotopoulou , George Economou

We describe the implementation of the Giudici-Green Metropolis sampling method for decomposable graphs using a variety of structures to represent the graph. These comprise the graph itself, the Junction tree, the Almond tree and the Ibarra…

Computation · Statistics 2023-10-18 Alun Thomas

We present improved distributed algorithms for triangle detection and its variants in the CONGEST model. We show that Triangle Detection, Counting, and Enumeration can be solved in $\tilde{O}(n^{1/2})$ rounds. In contrast, the previous…

Data Structures and Algorithms · Computer Science 2018-07-19 Yi-Jun Chang , Seth Pettie , Hengjie Zhang

In many models for large-scale computation, decomposition of the problem is key to efficient algorithms. For distance-related graph problems, it is often crucial that such a decomposition results in clusters of small diameter, while the…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-09-20 Ruben Becker , Yuval Emek , Christoph Lenzen

Graph states are a key resource for measurement-based quantum computation and quantum networking, but state-preparation costs limit their practical use. Graph states related by local complement (LC) operations are equivalent up to…

Quantum Physics · Physics 2026-04-01 Nicholas Connolly , Shin Nishio , Dan E. Browne , William John Munro , Kae Nemoto

The modular decomposition of a symmetric map $\delta\colon X\times X \to \Upsilon$ (or, equivalently, a set of symmetric binary relations, a 2-structure, or an edge-colored undirected graph) is a natural construction to capture key features…

Combinatorics · Mathematics 2021-03-12 Carmen Bruckmann , Peter F. Stadler , Marc Hellmuth

A graph is unipolar if it can be partitioned into a clique and a disjoint union of cliques, and a graph is a generalised split graph if it or its complement is unipolar. A unipolar partition of a graph can be used to find efficiently the…

Data Structures and Algorithms · Computer Science 2016-04-05 Colin McDiarmid , Nikola Yolov

In this paper, we explore the graph partitioning problem, a pivotal combina-torial optimization challenge with extensive applications in various fields such as science, technology, and business. Recognized as an NP-hard prob-lem, graph…

Machine Learning · Computer Science 2023-12-13 Vivek Chaudhary

The Split algorithm is an essential building block of route-first cluster-second heuristics and modern genetic algorithms for vehicle routing problems. The algorithm is used to partition a solution, represented as a giant tour without…

Data Structures and Algorithms · Computer Science 2018-05-08 Thibaut Vidal

We are developing an interactive graph exploration system called Graph Playground for making sense of large graphs. Graph Playground offers a fast and scalable edge decomposition algorithm, based on iterative vertex-edge peeling, to…

Human-Computer Interaction · Computer Science 2018-08-15 James Abello , Fred Hohman , Varun Bezzam , Duen Horng Chau

Circle graphs are intersection graphs of chords of a circle. In this paper, we present a new algorithm for the circle graph isomorphism problem running in time $O((n+m)\alpha(n+m))$ where $n$ is the number of vertices, $m$ is the number of…

Data Structures and Algorithms · Computer Science 2019-08-27 Vít Kalisz , Pavel Klavík , Peter Zeman

Expander decompositions form the basis of one of the most flexible paradigms for close-to-linear-time graph algorithms. Length-constrained expander decompositions generalize this paradigm to better work for problems with lengths, distances…

Data Structures and Algorithms · Computer Science 2024-05-16 Bernhard Haeupler , D Ellis Hershkowitz , Zihan Tan

Maintaining a $k$-core decomposition quickly in a dynamic graph has important applications in network analysis. The main challenge for designing efficient exact algorithms is that a single update to the graph can cause significant global…

Data Structures and Algorithms · Computer Science 2023-09-28 Quanquan C. Liu , Jessica Shi , Shangdi Yu , Laxman Dhulipala , Julian Shun

We argue that the existing knowledge about modular decomposition of graphs and clan decomposition of 2-structures can be put to use advantageously in a context of data analysis. We show how to obtain visual descriptions of co-occurrence…

Databases · Computer Science 2020-11-03 Marie Ely Piceno , José Luis Balcázar

A graph $G$ is said to be a $(k,\ell)$-graph if its vertex set can be partitioned into $k$ independent sets and $\ell$ cliques. It is well established that the recognition problem for $(k,\ell)$-graphs is NP-complete whenever $k \geq 3$ or…

Discrete Mathematics · Computer Science 2025-10-21 Flavia Bonomo-Braberman , Min Chih Lin , Ignacio Maqueda

With the frequent happening of privacy leakage and the enactment of privacy laws across different countries, data owners are reluctant to directly share their raw data and labels with any other party. In reality, a lot of these raw data are…

Machine Learning · Computer Science 2023-01-31 Xiaolong Xu , Lingjuan Lyu , Yihong Dong , Yicheng Lu , Weiqiang Wang , Hong Jin

Large language models (LLMs) have been demonstrated to possess the capabilities to understand fundamental graph properties and address various graph reasoning tasks. Existing methods fine-tune LLMs to understand and execute graph reasoning…

Machine Learning · Computer Science 2024-12-18 Rongzheng Wang , Shuang Liang , Qizhi Chen , Jiasheng Zhang , Ke Qin

(Hyper)Graph decomposition is a family of problems that aim to break down large (hyper)graphs into smaller sub(hyper)graphs for easier analysis. The importance of this lies in its ability to enable efficient computation on large and complex…

Data Structures and Algorithms · Computer Science 2023-08-31 Marcelo Fonseca Faraj