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Gene-sharing networks provide a powerful framework to study the evolution of viruses and mobile genetic elements. These bipartite networks, which link genes to the genomes that contain them, exhibit characteristic degree distributions: a…

Populations and Evolution · Quantitative Biology 2026-04-16 Jaime Iranzo , Pedro Jódar , Eugene V. Koonin , Susanna Manrubia , José A. Cuesta

We provide a framework for modeling social network formation through conditional multinomial logit models from discrete choice and random utility theory, in which each new edge is viewed as a "choice" made by a node to connect to another…

Social and Information Networks · Computer Science 2020-05-22 Jan Overgoor , Austin R. Benson , Johan Ugander

This work investigates and compares the performance of node-link diagrams, adjacency matrices, and bipartite layouts for visualizing networks. In a crowd-sourced user study (n = 150), we measure the task accuracy and completion time of the…

Human-Computer Interaction · Computer Science 2022-08-10 Moataz Abdelaal , Nathan D. Schiele , Katrin Angerbauer , Kuno Kurzhals , Michael Sedlmair , Daniel Weiskopf

In this paper, we introduce a general model for jointly modelling the nodal heterogeneity and covariates in weighted or unweighted bipartite networks, which contains two different types of nodes. The model has a degree heterogeneity…

Statistics Theory · Mathematics 2026-04-01 Wu Zuhui , Wang Qiuping , Yan Ting

We are interested in modeling networks in which the connectivity among the nodes and node attributes are random variables and interact with each other. We propose a probabilistic model that allows one to formulate jointly a probability…

Probability · Mathematics 2016-09-07 Haiyan Cai

We propose a method for extracting hierarchical backbones from a bipartite network. Our method leverages the observation that a hierarchical relationship between two nodes in a bipartite network is often manifested as an asymmetry in the…

Social and Information Networks · Computer Science 2020-03-20 Woo Seong Jo , Jaehyuk Park , Arthur Luhur , Beom Jun Kim , Yong-Yeol Ahn

Feed-forward multilayer neural networks implementing random input-output mappings develop characteristic correlations between the activity of their hidden nodes which are important for the understanding of the storage and generalization…

Condensed Matter · Physics 2009-10-28 Andreas Engel

The statistical mechanical approach to complex networks is the dominant paradigm in describing natural and societal complex systems. The study of network properties, and their implications on dynamical processes, mostly focus on locally…

Statistical Mechanics · Physics 2013-06-27 Giovanni Petri , Martina Scolamiero , Irene Donato , Francesco Vaccarino

We explore the relation between the topological relevance of a node in a complex network and the individual dynamics it exhibits. When the system is weakly coupled, the effect of the coupling strength against the dynamical complexity of the…

Chaotic Dynamics · Physics 2019-01-16 A. Tlaie , I. Leyva , R. Sevilla-Escoboza , V. P. Vera-Avila , I. Sendiña-Nadal

In multivariate statistics, acyclic mixed graphs with directed and bidirected edges are widely used for compact representation of dependence structures that can arise in the presence of hidden (i.e., latent or unobserved) variables. Indeed,…

Statistics Theory · Mathematics 2013-08-20 Christopher J. Fox , Andreas Käufl , Mathias Drton

The study of complex networks has been historically based on simple graph data models representing relationships between individuals. However, often reality cannot be accurately captured by a flat graph model. This has led to the…

Social and Information Networks · Computer Science 2013-03-21 Matteo Magnani , Barbora Micenkova , Luca Rossi

Latent Euclidean embedding models a given network by representing each node in a Euclidean space, where the probability of two nodes sharing an edge is a function of the distances between the nodes. This implies that for two nodes to share…

Social and Information Networks · Computer Science 2019-09-19 Clifford Anderson-Bergman , Phan Nguyen , Jose Cadena Pico

We demonstrate that the self-similarity of some scale-free networks with respect to a simple degree-thresholding renormalization scheme finds a natural interpretation in the assumption that network nodes exist in hidden metric spaces.…

Disordered Systems and Neural Networks · Physics 2008-12-03 M. Angeles Serrano , Dmitri Krioukov , Marian Boguna

This paper deals with dynamical networks for which the relations between node signals are described by proper transfer functions and external signals can influence each of the node signals. In particular, we are interested in…

Optimization and Control · Mathematics 2018-07-24 Henk J. van Waarde , Pietro Tesi , M. Kanat Camlibel

Among the proposed network models, the hidden variable (or good get richer) one is particularly interesting, even if an explicit empirical test of its hypotheses has not yet been performed on a real network. Here we provide the first…

Disordered Systems and Neural Networks · Physics 2009-02-06 D. Garlaschelli , M. I. Loffredo

In this paper, we investigate community detection in networks in the presence of node covariates. In many instances, covariates and networks individually only give a partial view of the cluster structure. One needs to jointly infer the full…

Methodology · Statistics 2018-04-26 Bowei Yan , Purnamrita Sarkar

Modularity is designed to measure the strength of division of a network into clusters (known also as communities). Networks with high modularity have dense connections between the vertices within clusters but sparse connections between…

Probability · Mathematics 2017-07-18 Liudmila Ostroumova Prokhorenkova , Pawel Pralat , Andrei Raigorodskii

Introduced recently, the concept of hierarchical degree allows a more complete characterization of the topological context of a node in a complex network than the traditional node degree. This article presents analytical characterization…

Statistical Mechanics · Physics 2007-05-23 Matheus Palhares Viana , Luciano da Fontoura Costa

Looking to overcome the limitations of traditional networks, the network science community has lately given much attention to the so-called higher-order networks, where group interactions are modeled alongside pairwise ones. While degree…

Physics and Society · Physics 2022-07-11 Demival Vasques Filho

We propose and investigate a unifying class of sparse random graph models, based on a hidden coloring of edge-vertex incidences, extending an existing approach, Random graphs with a given degree distribution, in a way that admits a…

Statistical Mechanics · Physics 2009-11-10 Bo Söderberg