Related papers: Efficient Seeds Computation Revisited
Considering the set cover problem, by modifying the approach that gives a logarithmic approximation guarantee for the greedy algorithm, we obtain an estimation of the greedy algorithm's accuracy for a particular input. We compare the…
Linear programming is a powerful method in combinatorial optimization with many applications in theory and practice. For solving a linear program quickly it is desirable to have a formulation of small size for the given problem. A useful…
This paper investigates the execution of tree-shaped task graphs using multiple processors. Each edge of such a tree represents a large IO file. A task can only be executed if all input and output files fit into memory, and a file can only…
The efficiency of exact subset sum problem algorithms which compute individual subset sums is defined as $e=min(T/z, 1)$, where $z$ is the number of subset sums computed. $e$ is related to these algorithms' computational complexity. This…
Short integer linear programs are programs with a relatively small number of constraints. We show how recent improvements on the running-times of solvers for such programs can be used to obtain fast pseudo-polynomial time algorithms for…
A fast algorithm is presented for determining the linear complexity and the minimal polynomial of periodic sequences over GF(q) with period q n p m, where p is a prime, q is a prime and a primitive root modulo p2. The algorithm presented…
In this paper we suggest analytical methods and associated algorithms for determining the sum of the subsets $X_m$ of the set $X_n$ (subset sum problem). Our algorithm has time complexity $T=O(C_{n}^{k})$ ($k=[m/2]$, which significantly…
This note provides very simple, efficient algorithms for computing the number of distinct longest common subsequences of two input strings and for computing the number of LCS embeddings.
It has been found that stochastic algorithms often find good solutions much more rapidly than inherently-batch approaches. Indeed, a very useful rule of thumb is that often, when solving a machine learning problem, an iterative technique…
The paper presents complexity results and performance guaranties for a family of approximation algorithms for an optimisation problem arising in software testing and manufacturing. The problem is formulated as a partitioning of a set where…
Enumeration algorithms have been one of recent hot topics in theoretical computer science. Different from other problems, enumeration has many interesting aspects, such as the computation time can be shorter than the total output size, by…
As DNA data storage moves closer to practical deployment, minimizing sequencing coverage depth is essential to reduce both operational costs and retrieval latency. This paper addresses the recently studied Random Access Problem, which…
Information extraction from textual data, where the query is represented by a finite transducer and the task is to enumerate all results without repetition, and its extension to the weighted case, where each output element has a weight and…
Given a pattern string $P$ of length $n$ and a query string $T$ of length $m$, where the characters of $P$ and $T$ are drawn from an alphabet of size $\Delta$, the {\em exact string matching} problem consists of finding all occurrences of…
Given a simple polygon $P$ consisting of $n$ vertices, we study the problem of designing space-efficient algorithms for computing (i) the visibility polygon of a point inside $P$, (ii) the weak visibility polygon of a line segment inside…
Determining whether an unordered collection of overlapping substrings (called shingles) can be uniquely decoded into a consistent string is a problem that lies within the foundation of a broad assortment of disciplines ranging from…
We present an algorithm computing the longest periodic subsequence of a string of length $n$ in $O(n^7)$ time with $O(n^4)$ words of space. We obtain improvements when restricting the exponents or extending the search allowing the reported…
The girth of a graph is the length of its shortest cycle. Due to its relevance in graph theory, network analysis and practical fields such as distributed computing, girth-related problems have been object of attention in both past and…
Seeded extractors are fundamental objects in pseudorandomness and cryptography, and a deep line of work has designed polynomial-time seeded extractors with nearly-optimal parameters. However, existing constructions of seeded extractors with…
In this work, we study the trade-off between the running time of approximation algorithms and their approximation guarantees. By leveraging a structure of the `hard' instances of the Arora-Rao-Vazirani lemma [JACM'09], we show that the…