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Studies of liquid water in its supercooled region have led to many insights into the structure and behavior of water. While bulk water freezes at its homogeneous nucleation temperature of approximately 235 K, for protein hydration water,…

Soft Condensed Matter · Physics 2015-03-13 Marco G. Mazza , Kevin Stokely , Sara E. Pagnotta , Fabio Bruni , H. Eugene Stanley , Giancarlo Franzese

The diffusional dynamics and vibrational spectroscopy of molecular hydrogen (H$_2$) in myoglobin (Mb) is characterized. Hydrogen has been implicated in a number of physiologically relevant processes, including cellular aging or…

Chemical Physics · Physics 2024-09-16 Jiri Käser , Kai Töpfer , Markus Meuwly

The understanding of dynamics and functioning of biological membranes and in particular of membrane embedded proteins is one of the most fundamental problems and challenges in modern biology and biophysics. In particular the impact of…

Biological Physics · Physics 2009-12-27 Maikel C. Rheinstadter

S-nitrosylation, the covalent addition of NO to the thiol side chain of cysteine, is an important post-transitional modification that can alter the function of various proteins. The structural dynamics and vibrational spectroscopy of…

Chemical Physics · Physics 2020-12-01 Haydar Taylan Turan , Markus Meuwly

The nature of blood as a suspension of red blood cells makes computational hemodynamics a demanding task. Our coarse-grained blood model, which builds on a lattice Boltzmann method for soft particle suspensions, enables the study of the…

Soft Condensed Matter · Physics 2011-09-16 Florian Janoschek , Francesca Mancini , Jens Harting , Federico Toschi

Binary mixtures of water with lower alcohols display non-linear phase behaviour upon mixing which are attributed to potential cluster formation at molecular level. Unravelling such elusive structures requires the investigation of…

Soft Condensed Matter · Physics 2023-10-09 Riccardo Morbidini , Robert M. Edkins , Mark Devonport , Gøran Nilsen , Tilo Seydel , Katharina Edkins

To study the correlation between internal protein dynamics and protein functionality of bacteriorhodopsin, we have performed time-resolved quasielastic neutron scattering (QENS) experiments combined with in situ laser activation of protein…

We present a continuum scale particle transport model for red blood cells following collision arguments in a diffusive flux formulation. The model is implemented in FOAM, in a framework for haemodynamics simulations. Modern mechanistic…

Fluid Dynamics · Physics 2021-09-02 Torsten Schenkel , Ian Halliday

We present incoherent quasi-elastic neutron scattering measurements in a wavevector transfer range from 0.4 AA^{-1} to 1.6AA^{-1} on liquid n-hexane confined in cylindrical, parallel-aligned nanochannels of 6 nm mean diameter and 260…

Soft Condensed Matter · Physics 2012-04-12 Tommy Hofmann , Dirk Wallacher , Maria Mayorova , Reiner Zorn , Bernhard Frick , Patrick Huber

The linear viscoelastic behavior of the red blood cell membrane of mammal and human was studied in previous works proposing different experimental methods to determine their viscoelastic parameters. In the present work the nonlinear…

Chaotic Dynamics · Physics 2007-05-23 Horacio Castellini , Bibiana Riquelme , Patricia Foresto

We demonstrate a technique based on noise measurements which can be utilized to study dynamical processes in protein assembly. Direct visualization of dynamics in membrane protein system such as bacteriorhodopsin (bR) upon photostimulation…

Chemical Physics · Physics 2015-05-27 Anshuman. J. Das , Sabyasachi Mukhopadhyay , K. S. Narayan

We present the first inelastic neutron scattering study of the short wavelength dynamics in a phospholipid bilayer. We show that inelastic neutron scattering using a triple-axis spectrometer at the high flux reactor of the ILL yields the…

Soft Condensed Matter · Physics 2016-08-16 M. C. Rheinstädter , C. Ollinger , G. Fragneto , T. Salditt

The multi-cellular hydrodynamic interactions play a critical role in the phenomenology of blood flow in the microcirculation. A fast algorithm has been developed to simulate large numbers of cells modeled as elastic thin membranes. For red…

Fluid Dynamics · Physics 2008-10-14 Amir H. G. Isfahani , Hong Zhao , Jonathan B. Freund

Multispectral imaging (MSI) can provide information about tissue oxygenation, perfusion and potentially function during surgery. In this paper we present a novel, near real-time technique for intrinsic measurements of total haemoglobin…

Computer Vision and Pattern Recognition · Computer Science 2017-06-23 Geoffrey Jones , Neil T. Clancy , Yusuf Helo , Simon Arridge , Daniel S. Elson , Danail Stoyanov

Thin layers of water on biomolecular and other nanostructured surfaces can be supercooled to temperatures not accessible with bulk water. Chen et al. [PNAS 103, 9012 (2006)] suggested that anomalies near 220 K observed by quasi-elastic…

Soft Condensed Matter · Physics 2010-03-04 W. Doster , S. Busch , A. M. Gaspar , M. -S. Appavou , J. Wuttke , H. Scheer

We calculate the scattering rate of low energy neutrinos in hot and dense neutron matter encountered in neutrons stars and supernova in the hydrodynamic regime. We find that the Brillouin peak, associated with the sound mode, and the…

Nuclear Theory · Physics 2015-06-18 Gang Shen , Sanjay Reddy

We report a high energy-resolution neutron backscattering study, combined with in-situ diffraction, to investigate slow molecular motions on nanosecond time scales in the fluid phase of phospholipid bilayers of…

Biological Physics · Physics 2009-10-02 Maikel C. Rheinstadter , Jhuma Das , Elijah J. Flenner , Beate Bruening , Tilo Seydel , Ioan Kosztin

Oxygen is transported throughout the body by hemoglobin in red blood cells. While the oxygen affinity of blood is well understood and is routinely assessed in patients by pulse oximetry, variability at the single-cell level has not been…

Biological Physics · Physics 2015-05-18 Di Caprio , Chris Stokes , John M. Higgins , Ethan Schonbrun

The near infrared scattering images of human muscle include some information on bloodstream and hemoglobin concentration according to skin depth and time. This paper addressed a method of determining oxygen saturation and photoplethysmogram…

Medical Physics · Physics 2016-04-26 Yong-U Ri , Young-Hui Pyon , Kye-Ryong Sin

Enhanced dynamical fluctuations of RNAs, facilitated by a network of water molecules with strong interactions with RNA, are suspected to be critical in their ability to respond to a variety of cellular signals. Using atomically detailed…

Biomolecules · Quantitative Biology 2015-01-15 Jeseong Yoon , Jong-Chin Lin , Changbong Hyeon , D. Thirumalai
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