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Empirical evidence suggesting that living systems might operate in the vicinity of critical points, at the borderline between order and disorder, has proliferated in recent years, with examples ranging from spontaneous brain activity to…

Statistical Mechanics · Physics 2014-07-25 Jorge Hidalgo , Jacopo Grilli , Samir Suweis , Miguel A. Munoz , Jayanth R. Banavar , Amos Maritan

Biologists measure information in different ways. Neurobiologists and researchers in bioinformatics often measure information using information-theoretic measures such as Shannon's entropy or mutual information. Behavioral biologists and…

Populations and Evolution · Quantitative Biology 2007-07-13 Carl T. Bergstrom , Michael Lachmann

The concept of autonomy is fundamental for understanding biological organization and the evolutionary transitions of living systems. Understanding how a system constitutes itself as an individual, cohesive, self-organized entity is a…

Neurons and Cognition · Quantitative Biology 2019-02-07 Miguel Aguilera , Ezequiel Di Paolo

The growth rate of organisms depends both on external conditions and on internal states, such as the expression levels of various genes. We show that to achieve a criterion mean growth rate over an ensemble of conditions, the internal…

Populations and Evolution · Quantitative Biology 2007-12-31 Samuel F. Taylor , Naftali Tishby , William Bialek

Integrated Information Theory (IIT) is a prominent theory of consciousness that has at its centre measures that quantify the extent to which a system generates more information than the sum of its parts. While several candidate measures of…

Neurons and Cognition · Quantitative Biology 2019-01-30 Pedro A. M. Mediano , Anil K. Seth , Adam B. Barrett

The concept of information has emerged as a language in its own right, bridging several disciplines that analyze natural phenomena and man-made systems. Integrated information has been introduced as a metric to quantify the amount of…

Neurons and Cognition · Quantitative Biology 2019-06-10 Alberto Hernández-Espinosa , Héctor Zenil , Narsis A. Kiani , Jesper Tegnér

The apparent dichotomy between information-processing and dynamical approaches to complexity science forces researchers to choose between two diverging sets of tools and explanations, creating conflict and often hindering scientific…

Neurons and Cognition · Quantitative Biology 2022-01-26 Pedro A. M. Mediano , Fernando E. Rosas , Juan Carlos Farah , Murray Shanahan , Daniel Bor , Adam B. Barrett

Advances in IoT technologies combined with new algorithms have enabled the collection and processing of high-rate multi-source data streams that quantify human behavior in a fine-grained level and can lead to deeper insights on individual…

Biological information processing manifests a huge variety in its complexity and capability among different organisms, which presumably stems from the evolutionary optimization under limited computational resources. Starting from the…

Biological Physics · Physics 2025-10-21 Takehiro Tottori , Tetsuya J. Kobayashi

Over the past decade, AI has made a remarkable progress. It is agreed that this is due to the recently revived Deep Learning technology. Deep Learning enables to process large amounts of data using simplified neuron networks that simulate…

Artificial Intelligence · Computer Science 2015-02-19 Emanuel Diamant

A common assumption in evolutionary thought is that adaptation drives an increase in biological complexity. However, the rules governing evolution of complexity appear more nuanced. Evolution is deeply connected to learning, where…

Populations and Evolution · Quantitative Biology 2025-08-06 Hagai Rappeport , Mor Nitzan

Biological organisms adapt to changes by processing informations from different sources, most notably from their ancestors and from their environment. We review an approach to quantify these informations by analyzing mathematical models of…

Populations and Evolution · Quantitative Biology 2016-03-23 Olivier Rivoire

We are at the beginning of a new age in which artificial entities will perform significant amounts of high-level cognitive processing rivaling and even surpassing human thinking. The future belongs to those who can best collaborate with…

Human-Computer Interaction · Computer Science 2022-11-15 Ron Fulbright

The capacity to integrate information is a prominent feature of biological and cognitive systems. Integrated Information Theory (IIT) provides a mathematical approach to quantify the level of integration in a system, yet its computational…

Neurons and Cognition · Quantitative Biology 2020-08-31 Miguel Aguilera , Ezequiel Di Paolo

An embodied agent constantly influences its environment and is influenced by it. We use the sensorimotor loop to model these interactions and thereby we can quantify different information flows in the system by various information theoretic…

Information Theory · Computer Science 2024-11-15 Carlotta Langer , Nihat Ay

Mutual information and its causal variant, directed information, have been widely used to quantitatively characterize the performance of biological sensing and information transduction. However, once coupled with selection in response to…

Populations and Evolution · Quantitative Biology 2017-12-29 Tetsuya J. Kobayashi , Yuki Sughiyama

Accumulating evidence indicates that the capacity to integrate information in the brain is a prerequisite for consciousness. Integrated Information Theory (IIT) of consciousness provides a mathematical approach to quantifying the…

Neurons and Cognition · Quantitative Biology 2016-02-22 Masafumi Oizumi , Shun-ichi Amari , Toru Yanagawa , Naotaka Fujii , Naotsugu Tsuchiya

The Integrated Information Theory provides a quantitative approach to consciousness and can be applied to neural networks. An embodied agent controlled by such a network influences and is being influenced by its environment. This involves,…

Neurons and Cognition · Quantitative Biology 2021-11-30 Carlotta Langer , Nihat Ay

Organisms have evolved immune systems that can counter pathogenic threats. The adaptive immune system in vertebrates consists of a diverse repertoire of immune receptors that can dynamically reorganize to specifically target the…

Populations and Evolution · Quantitative Biology 2024-10-29 Quinn N Bellamy , Zachary Montague , Luca Peliti , Armita Nourmohammad

Information theory has explained the organization of many biological phenomena, from the physiology of sensory receptive fields to the variability of certain DNA sequence ensembles. Some scholars have proposed that information should…

Other Quantitative Biology · Quantitative Biology 2010-10-25 Edward K. Agarwala , Hillel J. Chiel , Peter J. Thomas
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