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This paper deepens into the analysis of the protein secondary structure using Frenet frame to describe the curvature and torsion of the discrete curve formed by the protein $\alpha$-carbons. We show how a simple criterion based on the…

Biological Physics · Physics 2025-12-08 M. Prados , M. D. Hernández de la Torre , F. de Soto

This paper introduces the concept of Fractal Frenet equations, a set of differential equations used to describe the behavior of vectors along fractal curves. The study explores the analogue of arc length for fractal curves, providing a…

General Mathematics · Mathematics 2024-04-15 Alireza Khalili Golmankhaneh , Palle E. T. Jørgensen , Dimiter Prodanov

Protein molecules can be approximated by discrete polygonal chains of amino acids. Standard topological tools can be applied to the smoothening of the polygons to introduce a topological classification of proteins, for example, using the…

Biomolecules · Quantitative Biology 2019-03-12 Dmitry Melnikov , Antti J Niemi , Ara Sedrakyan

Utilizing recently developed abstract notions of sectional curvature, we introduce a method for constructing a curvature-based geometric profile of discrete metric spaces. The curvature concept that we use here captures the metric relations…

Computer Vision and Pattern Recognition · Computer Science 2025-09-18 Charlotte Beylier , Parvaneh Joharinad , Jürgen Jost , Nahid Torbati

Using the moving frame and invariants, any discrete curve in $\R^3$ could be uniquely identified by its centroaffine curvatures and torsions. In this paper, depending on the affine curvatures of the fractal curves, such as Koch curve and…

Differential Geometry · Mathematics 2016-12-19 Yun Yang , Yanhua Yu

Motivated by the existence problem of Fourier frames on fractal measures, we introduce Bessel and frame measures for a given finite measure on $\br^d$, as extensions of the notions of Bessel and frame spectra that correspond to bases of…

Functional Analysis · Mathematics 2012-04-03 Dorin Ervin Dutkay , Deguang Han , Eric Weber

We propose a notion of discrete elastic and area-constrained elastic curves in 2-dimensional space forms. Our definition extends the well-known discrete Euclidean curvature equation to space forms and reflects various geometric properties…

Differential Geometry · Mathematics 2025-01-24 Tim Hoffmann , Jannik Steinmeier , Gudrun Szewieczek

The paper is devoted to differential geometric invariants determining a Frenet curve in up to a direct similarity These invariants can be presented by the Euclidean curvatures in terms of an arc lengths of the spherical indicatrices. Then,…

Differential Geometry · Mathematics 2017-11-30 Fatma Gökçelik , Seher Kaya , Yusuf Yayli , F. Nejat Ekmekci

In this letter, the possible dynamic scaling properties of protein molecules in folding are investigated theoretically by assuming that the protein molecules are percolated networks. It is shown that the fractal character and the fractal…

Condensed Matter · Physics 2007-05-23 Liang-Jian Zou , X. G. Gong , Zheng-Gang Zhu

This paper proposes a new mathematical framework that can be applied to biological problems such as analysis of the structures of proteins and protein complexes. In particular, it gives a new method for encoding the three-dimensional…

Combinatorics · Mathematics 2007-05-23 Naoto Morikawa

In nature the three-dimensional structure of a protein is encoded in the corresponding gene. In this paper we describe a new method for encoding the three-dimensional structure of a protein into a binary sequence. The feature of the method…

Combinatorics · Mathematics 2007-05-23 Naoto Morikawa

The analysis of curves has been routinely dealt with using tools from functional data analysis. However its extension to multi-dimensional curves poses a new challenge due to its inherent geometric features that are difficult to capture…

Methodology · Statistics 2022-03-07 Juhyun Park , Nicolas Brunel , Perrine Chassat

Accurately segmenting 3D curvilinear structures in medical imaging remains challenging due to their complex geometry and the scarcity of diverse, large-scale datasets for algorithm development and evaluation. In this paper, we use dendritic…

Computer Vision and Pattern Recognition · Computer Science 2025-07-15 Leslie Gu , Jason Ken Adhinarta , Mikhail Bessmeltsev , Jiancheng Yang , Yongjie Jessica Zhang , Wenjie Yin , Daniel Berger , Jeff Lichtman , Hanspeter Pfister , Donglai Wei

This thesis is devoted to the Differential Geometry of curves and surfaces along with applications in Quantum Mechanics. In the 1st part we introduce the well known Frenet frame. Later, we show that the curvature function is a lower bound…

Differential Geometry · Mathematics 2018-06-26 Luiz C. B. da Silva

The {\em focal curve} of an immersed smooth curve $\gamma:s\mapsto \gamma(s)$, in Euclidean space $\R^{m+1}$, consists of the centres of its osculating hyperspheres. The focal curve may be parametrised in terms of the Frenet frame of…

Differential Geometry · Mathematics 2019-11-05 Ricardo Uribe-Vargas

Any two equivalent discrete curves must have the same invariants at the corresponding points under an affine transformation. In this paper, we construct the moving frame and invariants for the discrete centroaffine curves, which could be…

Differential Geometry · Mathematics 2016-12-04 Yun Yang

Finite frames, or spanning sets for finite-dimensional Hilbert spaces, are a ubiquitous tool in signal processing. There has been much recent work on understanding the global structure of collections of finite frames with prescribed…

Functional Analysis · Mathematics 2023-09-14 Tom Needham , Clayton Shonkwiler

In this paper we derive a variational formulation for a linear curved beam which is natively expressed in global Cartesian coordinates. During derivation the beam midline is assumed to be implicitly described by a vector distance function…

Numerical Analysis · Mathematics 2014-04-09 Peter Hansbo , Mats G. Larson , Karl Larsson

Geometric frameworks for analyzing curves are common in applications as they focus on invariant features and provide visually satisfying solutions to standard problems such as computing invariant distances, averaging curves, or registering…

Methodology · Statistics 2025-11-24 Perrine Chassat , Juhyun Park , Nicolas Brunel

Discrete trigonometric transformations, such as the discrete Fourier and cosine/sine transforms, are important in a variety of applications due to their useful properties. For example, one well-known property is the convolution theorem for…

Information Theory · Computer Science 2015-10-05 Xing Ouyang , Cleitus Antony , Fatima Gunning , Hongyu Zhang , Yong Liang Guan
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