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When handling streaming graphs, existing graph representation learning models encounter a catastrophic forgetting problem, where previously learned knowledge of these models is easily overwritten when learning with newly incoming graphs. In…

Machine Learning · Computer Science 2024-07-11 Yilun Liu , Ruihong Qiu , Yanran Tang , Hongzhi Yin , Zi Huang

We study a coarse-graining procedure for quantum cellular automata on hypercubic lattices that consists in grouping neighboring cells into tiles and selecting a subspace within each tile. This is done in such a way that multiple evolution…

Quantum Physics · Physics 2025-06-04 Lorenzo Siro Trezzini , Alessandro Bisio , Paolo Perinotti

In studying the predictability of emergent phenomena in complex systems, Israeli & Goldenfeld (Phys. Rev. Lett., 2004; Phys. Rev. E, 2006) showed how to coarse-grain (elementary) cellular automata (CA). Their algorithm for finding…

Cellular Automata and Lattice Gases · Physics 2020-12-23 Yerim Song , Joshua A. Grochow

Recently, data-centric AI methodology has been a dominant paradigm in single-cell transcriptomics analysis, which treats data representation rather than model complexity as the fundamental bottleneck. In the review of current studies,…

Machine Learning · Computer Science 2026-05-08 Ru Zhang , Xunkai Li , Yaxin Deng , Sicheng Liu , Daohan Su , Qiangqiang Dai , Hongchao Qin , Rong-Hua Li , Guoren Wang , Jia Li

We systematically study the boundaries of one-dimensional, 2-color cellular automata depending on 4 cells, begun from simple initial conditions. We determine the exact growth rates of the boundaries that appear to be reducible. Morphic…

Cellular Automata and Lattice Gases · Physics 2015-03-13 Charles D. Brummitt , Eric Rowland

Deep learning models (DLMs) achieve increasingly high performance both on structured and unstructured data. They significantly extended applicability of machine learning to various domains. Their success in making predictions, detecting…

Artificial Intelligence · Computer Science 2025-01-03 Matej Mihelčić , Ivan Grubišić , Miha Keber

We investigate the ability of algorithms developed for reverse engineering of transcriptional regulatory networks to reconstruct metabolic networks from high-throughput metabolite profiling data. For this, we generate synthetic metabolic…

Molecular Networks · Quantitative Biology 2007-11-19 Ilya Nemenman , G. Sean Escola , William S. Hlavacek , Pat J. Unkefer , Clifford J. Unkefer , Michael E. Wall

This paper deals with the theory and application of 2-Dimensional, nine-neighborhood, null- boundary, uniform as well as hybrid Cellular Automata (2D CA) linear rules in image processing. These rules are classified into nine groups…

Discrete Mathematics · Computer Science 2008-04-16 Pabitra Pal Choudhury , Birendra Kumar Nayak , Sudhakar Sahoo , Sunil Pankaj Rath

A commonly used model for fault-tolerant computation is that of cellular automata. The essential difficulty of fault-tolerant computation is present in the special case of simply remembering a bit in the presence of faults, and that is the…

Probability · Mathematics 2012-07-25 Mark McCann , Nicholas Pippenger

In this paper, we propose a novel model called Recurrent Explicit Duration Switching Linear Dynamical Systems (REDSLDS) that incorporates recurrent explicit duration variables into the rSLDS model. We also propose an inference and learning…

Machine Learning · Computer Science 2024-11-08 Mikołaj Słupiński , Piotr Lipiński

Signal machines form an abstract and idealised model of collision computing. Based on dimensionless signals moving on the real line, they model particle/signal dynamics in Cellular Automata. Each particle, or signal, moves at constant speed…

Formal Languages and Automata Theory · Computer Science 2019-03-22 Florent Becker , Tom Besson , Jérôme Durand-Lose , Aurélien Emmanuel , Mohammad-Hadi Foroughmand-Araabi , Sama Goliaei , Shahrzad Heydarshahi

Cellular automata (CA) exemplify systems where simple local interaction rules can lead to intricate and complex emergent phenomena at large scales. The various types of dynamical behavior of CA are usually categorized empirically into…

Cellular Automata and Lattice Gases · Physics 2024-06-10 Wout Merbis , Calvin Bakker

Cellular automata are widely used to model natural or artificial systems. Classically they are run with perfect synchrony, i.e., the local rule is applied to each cell at each time step. A possible modification of the updating scheme…

Cellular Automata and Lattice Gases · Physics 2008-02-13 Nazim A. Fatès

We propose that the behaviour of non-linear media can be controlled automatically through coevolutionary systems. By extension, forms of unconventional computing, i.e., massively parallel non-linear computers, can be realised by such an…

Emerging Technologies · Computer Science 2012-12-13 Christopher Stone , Rita Toth , Ben de Lacy Costello , Larry Bull , Andrew Adamatzky

The Global Cellular Automata (GCA) Model is a generalization of the Cellular Automata (CA) Model. The GCA model consists of a collection of cells which change their states depending on the states of their neighbors, like in the classical CA…

Formal Languages and Automata Theory · Computer Science 2022-07-12 Rolf Hoffmann

In this paper we propose a rule-independent description of applications of cellular automata rules for one-dimensional additive cellular automata on cylinders of finite sizes. This description is shown to be a useful tool for for answering…

Dynamical Systems · Mathematics 2007-05-23 Valeriy K. Bulitko

This paper presents a novel approach to the description and understanding of two-dimensional binary cellular automata with the Moore neighborhood that preserve the number of active cells. Such dynamical systems are known to successfully…

Dynamical Systems · Mathematics 2025-12-10 B. Wolnik , D. M. Falkiewicz , W. Bołt , A. Rutkowski , B. De Baets

We use Topological Data Analysis tools for studying the inner organization of cells in segmented images of epithelial tissues. More specifically, for each segmented image, we compute different persistence barcodes, which codify lifetime of…

Computer Vision and Pattern Recognition · Computer Science 2022-04-11 N. Atienza , M. J. Jimenez , M. Soriano-Trigueros

We study qualitative properties of two-dimensional freezing cellular automata with a binary state set initialized on a random configuration. If the automaton is also monotone, the setting is equivalent to bootstrap percolation. We explore…

Probability · Mathematics 2022-04-20 Ville Salo , Guillaume Theyssier , Ilkka Törmä

We present a method for computing probability of occurence of 1s in a configuration obtained by iteration of a probabilistic cellular automata (PCA), starting from a random initial configuration. If the PCA is sufficiently simple, one can…

Cellular Automata and Lattice Gases · Physics 2023-12-18 Henryk Fukś
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