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How do complex adaptive systems, such as life, emerge from simple constituent parts? In the 1990s Walter Fontana and Leo Buss proposed a novel modeling approach to this question, based on a formal model of computation known as $\lambda$…

Adaptation and Self-Organizing Systems · Physics 2024-08-26 Cole Mathis , Devansh Patel , Westley Weimer , Stephanie Forrest

The basic laws of physics are simple, so why is the world complex? The theory of self-organized criticality posits that complex behavior in nature emerges from the dynamics of extended, dissipative systems that evolve through a sequence of…

Statistical Mechanics · Physics 2007-05-23 Maya Paczuski , Per Bak

This work concerns a many-body deterministic model that displays life-like properties as emergence, complexity, self-organization, spontaneous compartmentalization, and self-regulation. The model portraits the dynamics of an ensemble of…

Adaptation and Self-Organizing Systems · Physics 2023-07-11 Alessandro Scirè , Valerio Annovazzi-Lodi

Efforts to catalogue the structure of metabolic networks have generated highly detailed, genome-scale atlases of biochemical reactions in the cell. Unfortunately, these atlases fall short of capturing the kinetic details of metabolic…

Molecular Networks · Quantitative Biology 2013-04-25 Ed Reznik , Alex Watson , Osman Chaudhary

Driven systems offer the potential to realize a wide range of non-equilibrium phenomena that are inaccessible in static systems, such as the discrete time crystals. Time rondeau crystals with a partial temporal order have been proposed as a…

Statistical Mechanics · Physics 2025-10-24 Zhuocheng Ma , Jin Yan , Hongzheng Zhao , Liang-You Peng

Through extensive studies of dynamical system modeling cellular growth and reproduction, we find evidence that complexity arises in multicellular organisms naturally through evolution. Without any elaborate control mechanism, these systems…

Adaptation and Self-Organizing Systems · Physics 2009-10-31 Chikara Furusawa , Kunihiko Kaneko

There has recently been an explosion of interest in how "higher-order" structures emerge in complex systems. This "emergent" organization has been found in a variety of natural and artificial systems, although at present the field lacks a…

Information Theory · Computer Science 2024-01-30 Thomas F. Varley , Joshua Bongard

Stochastic Structural Stability Theory (SSST) provides an autonomous, deterministic, nonlinear dynamical system for evolving the statistical mean state of a turbulent system. In this work SSST is applied to the problem of understanding the…

Fluid Dynamics · Physics 2014-12-30 Brian F. Farrell , Petros J. Ioannou

Understanding the structural evolution of granular systems is a long-standing problem. A recently proposed theory for such dynamics in two dimensions predicts that steady states of very dense systems satisfy detailed-balance. We analyse…

Soft Condensed Matter · Physics 2023-08-16 Alex D. C. Myhill , Raphael Blumenfeld

Living systems maintain or increase local order by working against the Second Law of Thermodynamics. Thermodynamic consistency is restored as they dissipate heat, thereby increasing the net entropy of their environment. Recently introduced…

Biological Physics · Physics 2021-05-03 Dominic J. Skinner , Jörn Dunkel

We introduce a provably stable variant of neural ordinary differential equations (neural ODEs) whose trajectories evolve on an energy functional parametrised by a neural network. Stable neural flows provide an implicit guarantee on…

Machine Learning · Computer Science 2020-03-19 Stefano Massaroli , Michael Poli , Michelangelo Bin , Jinkyoo Park , Atsushi Yamashita , Hajime Asama

Open dynamical systems are mathematical models of machines that take input, change their internal state, and produce output. For example, one may model anything from neurons to robots in this way. Several open dynamical systems can be…

Dynamical Systems · Mathematics 2016-02-25 David I. Spivak

Stable chaos is a generalization of the chaotic behaviour exhibited by cellular automata to continuous-variable systems and it owes its name to an underlying irregular and yet linearly stable dynamics. In this review we discuss analogies…

Chaotic Dynamics · Physics 2010-10-19 Antonio Politi , Alessandro Torcini

We introduce a phenomenological theory for a new class of soft active fluids, with the ability to synchronise. Our theoretical framework describes the macroscopic behaviour of a collection of interacting anisotropic elements with cyclic…

Soft Condensed Matter · Physics 2015-06-16 M. Leoni , T. B. Liverpool

Self-organization phenomena in ensembles of self-propelled particles open pathways to the synthesis of new dynamic states not accessible by traditional equilibrium processes. The challenge is to develop a set of principles that facilitate…

Soft Condensed Matter · Physics 2022-05-26 Bo Zhang , Alexey Snezhko , Andrey Sokolov

It is generally recognized that a distinguishing feature of life is its peculiar capability to avoid equilibration. The origin of this capability and its evolution along the timeline of abiogenesis is not yet understood. We propose to study…

Molecular Networks · Quantitative Biology 2016-10-13 Dmitry Yu. Zubarev , Leonardo A. Pachón

Materials and machines are often designed with particular goals in mind, so that they exhibit desired responses to given forces or constraints. Here we explore an alternative approach, namely physical coupled learning. In this paradigm, the…

Soft Condensed Matter · Physics 2021-09-07 Menachem Stern , Daniel Hexner , Jason W. Rocks , Andrea J. Liu

When two molecular species with mutual affinity are mixed together, various self-assembled phases can arise at low temperature, depending on the shape of like and unlike interactions. Among them, stripes -- where layers of one type are…

Soft Condensed Matter · Physics 2026-01-21 Gabriele Costa , Santi Prestipino

Flow matching is a scalable generative framework for characterizing continuous normalizing flows with wide-range applications. However, current state-of-the-art methods are not well-suited for modeling dynamical systems, as they construct…

Machine Learning · Computer Science 2026-05-15 Santanu Subhash Rathod , Pietro Liò , Xiao Zhang

This paper develops a conceptual extension of the Kinetic Theory of Active Particles, building upon the framework introduced in [2]. Living systems cannot be adequately described within classical single-scale paradigms, even when refined.…

Dynamical Systems · Mathematics 2026-04-22 Diletta Burini , Damian A. Knopoff