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Biopolymer looping is a dynamic process that occurs ubiquitously in cells for gene regulation, protein folding, etc. In cellular environments, biopolymers are often subject to tensions which are either static, or temporally fluctuating far…

Soft Condensed Matter · Physics 2012-02-07 Jaeoh Shin , Wokyung Sung

We present a general theoretical analysis of semiflexible filaments subject to viscous drag or point forcing. These are the relevant forces in dynamic experiments designed to measure biopolymer bending moduli. By analogy with the ``Stokes…

Soft Condensed Matter · Physics 2009-10-30 Chris H. Wiggins , Daniel X. Riveline , Albrecht Ott , Raymond E. Goldstein

Concepts from elementary quantum mechanics can be used to understand vortex line fluctuations in high-temperature superconductors. Flux lines are essentially classical objects, described by a string tension, their mutual repulsion, and…

Condensed Matter · Physics 2007-05-23 David R. Nelson

We study low--temperature non Gaussian thermal fluctuations of a system of classical particles around a (hypothetical) crystalline ground state. These thermal fluctuations are described by the behaviour of a system of long range interacting…

Condensed Matter · Physics 2007-05-23 Sergio Albeverio , Roman Gielerak , Helge Holden , Torbjørn Kolsrud , Mohammed Mebkhout

We consider a model of an extensible semiflexible filament moving in two dimensions on a motility assay of motor proteins represented explicitly as active harmonic linkers. Their heads bind stochastically to polymer segments within a…

Biological Physics · Physics 2021-08-31 Amir Shee , Nisha Gupta , Abhishek Chaudhuri , Debasish Chaudhuri

Recently (arXiv:0910.2870), we have derived a fluctuation theorem for systems in thermodynamic equilibrium compatible with anomalous response functions, e.g. the existence of states with \textit{negative heat capacities} $C<0$. In this…

Statistical Mechanics · Physics 2013-07-31 L. Velazquez , S. Curilef

Mechanical instability takes different forms in various ordered and disordered systems. We study the effect of thermal fluctuations in two disordered central-force lattice models near mechanical instability: randomly diluted triangular…

Soft Condensed Matter · Physics 2016-02-17 Leyou Zhang , Xiaoming Mao

Using results from Schramm Loewner evolution (SLE), we give the expression of the fluctuation-induced force exerted by a polymer on a small impenetrable disk, in various 2-dimensional domain geometries. We generalize to two polymers and…

Statistical Mechanics · Physics 2015-05-13 Pierre Le Doussal , Kay Jörg Wiese

Subjected to compressive stresses, soft polymers with stiffness gradients can display various buckling patterns. These compressive stresses can have different origins, like mechanical forces, temperature changes, or, for hydrogel materials,…

Soft Condensed Matter · Physics 2019-10-18 Arne Ilseng , Victorien Prot , Bjørn T. Stokke , Bjørn H. Skallerud

The non-equilibrium structural and dynamical properties of a semiflexible polymer confined in a cylindrical microchannel and exposed to a Poiseuille flow is studied by mesoscale hydrodynamic simulations. For a polymer with a length half of…

Soft Condensed Matter · Physics 2010-08-09 Raghunath Chelakkot , Roland. G. Winkler , Gerhard Gompper

We study the bulk and shear elastic properties of barely-compressed, "athermal" emulsions and find that the rigidity of the jammed solid fails at remarkably large critical osmotic pressures. The minuscule yield strain and similarly small…

Soft Condensed Matter · Physics 2020-08-12 Rodrigo E. Guerra

We study the nonequilibrium kinetics during the coil-globule transition of a flexible polymer chain with active beads after a quench from good to poor solvent condition using molecular dynamics simulation. Activity for each bead is…

Soft Condensed Matter · Physics 2022-04-13 Subhajit Paul , Suman Majumder , Wolfhard Janke

We elucidate the polymer dynamics of a liquid crystal elastomer based on the time-dependent response of the pendent liquid crystal mesogens. The molecular tilt and switching time of mesogens are analyzed as a function of temperature and…

Soft Condensed Matter · Physics 2010-06-08 Christopher M. Spillmann , Amit V. Kapur , Frank W. Bentrem , Jawad Naciri , Banahalli R. Ratna

Coupled systems in mesoscopic regime are of interest as charge fluctuation between the sub-systems will depend on electron-electron interactions and will play a dominant role in determining their thermodynamic properties. We study some…

Mesoscale and Nanoscale Physics · Physics 2009-09-29 P. Singha Deo , P. Koskinen , M. Manninen

When stretched uniaxially, a thin elastic sheet may exhibit buckling. The occurrence of buckling depends on the geometrical properties of the sheet and the magnitude of the applied strain. Here we show that an elastomeric sheet initially…

Soft Condensed Matter · Physics 2013-11-25 Alessandro Lucantonio , Matthieu Roché , Paola Nardinocchi , Howard A. Stone

Buckling plays a critical role in the transport and dynamics of elastic microfilaments in Stokesian fluids. However, previous work has only considered filaments with homogeneous structural properties. Filament backbone stiffness can be…

Soft Condensed Matter · Physics 2023-01-20 Thomas Nguyen , Harishankar Manikantan

Molecular dynamics simulations are used to study a unique expanded jammed state. Tension transforms many glassy polymers from a dense glass to a network of fibrils and voids called a craze. Entanglements between polymers and interchain…

Soft Condensed Matter · Physics 2009-11-07 Jörg Rottler , Mark O. Robbins

We report tensile failure experiments on polyurethane (PU) foams. Experiments have been performed by imposing a constant strain rate. We work on heterogeneous materials for whom the failure does not occur suddenly and can develop as a…

Materials Science · Physics 2007-06-27 Stéphanie Deschanel , Loïc Vanel , Gérard Vigier , Nathalie Godin , Sergio Ciliberto

The archetypal instability of a structure is associated with the eponymous Euler beam, modeled as an inextensible curve which exhibits a supercritical bifurcation at a critical compressive load. In contrast, a soft compressible beam is…

Classical Physics · Physics 2025-01-15 Ee Hou Yong , L. Mahadevan

Flutter instability in an infinite medium is a form of material instability corresponding to the occurrence of complex conjugate squares of the acceleration wave velocities. Although its occurrence is known to be possible in elastoplastic…

Mathematical Physics · Physics 2015-05-20 Andrea Piccolroaz , Davide Bigoni , John R. Willis