Related papers: Consecutive Ones Property and PQ-Trees for Multise…

Let C be a finite set of $N elements and R = {R_1,R_2, ..,R_m} a family of M subsets of C. The family R verifies the consecutive ones property if there exists a permutation P of C such that each R_i in R is an interval of P. There already…

A binary matrix has the Consecutive Ones Property (C1P) if its columns can be ordered in such a way that all 1's on each row are consecutive. A Minimal Conflicting Set is a set of rows that does not have the C1P, but every proper subset has…

A binary matrix $M$ has the consecutive ones property ($C1P$) for rows (resp. columns) if there is a permutation of its columns (resp. rows) that arranges the ones consecutively in all the rows (resp. columns). If $M$ has the $C1P$ for rows…

Motivated by problems of comparative genomics and paleogenomics, in [Chauve et al., 2009], the authors introduced the Gapped Consecutive-Ones Property Problem (k,delta)-C1P: given a binary matrix M and two integers k and delta, can the…

We prove that deciding whether a given input word contains as subsequence every possible permutation of integers $\{1,2,\ldots,n\}$ is coNP-complete. The coNP-completeness holds even when given the guarantee that the input word contains as…

We describe simple algebraic and combinatorial characterisations of finite relational core structures admitting finitely many obstructions. As a consequence, we show that it is decidable to determine whether a constraint satisfaction…

Interpreting three-leaf binary trees or {\em rooted triples} as constraints yields an entailment relation, whereby binary trees satisfying some rooted triples must also thus satisfy others, and thence a closure operator, which is known to…

A binary matrix $M$ has the Consecutive Ones Property (COP) if there exists a permutation of columns that arranges the ones consecutively in all the rows. Given a matrix, the $d$-COS-R problem is to determine if there exists a set of at…

We systematically study the computational complexity of a broad class of computational problems in phylogenetic reconstruction. The class contains for example the rooted triple consistency problem, forbidden subtree problems, the quartet…

Let S be a basic closed semi-algebraic set in R^n and P the corresponding preordering in R[X_1,...,X_n]. We examine for which polynomials f there exist identities f+\ep q \in P for all \ep>0. These are precisely the elements of the…

We consider the well-studied pattern counting problem: given a permutation $\pi \in \mathbb{S}_n$ and an integer $k > 1$, count the number of order-isomorphic occurrences of every pattern $\tau \in \mathbb{S}_k$ in $\pi$. Our first result…

The problem of lifting a preference order on a set of objects to a preference order on a family of subsets of this set is a fundamental problem with a wide variety of applications in AI. The process is often guided by axioms postulating…

Permutation Pattern Matching (or PPM) is a decision problem whose input is a pair of permutations $\pi$ and $\tau$, represented as sequences of integers, and the task is to determine whether $\tau$ contains a subsequence order-isomorphic to…

The Consecutive-Ones Property (C1P) is a classical concept in discrete mathematics that has been used in several genomics applications, from physical mapping of contemporary genomes to the assembly of ancient genomes. A common issue in…

Given an order, a commutative ring whose additive group is free of finite rank, a natural computational question is whether a fixed univariate polynomial $f \in \mathbb{Z}[X]$ has a root in this ring. In this paper, we show that the…

We study the counting problem known as #PPM, whose input is a pair of permutations $\pi$ and $\tau$ (called pattern and text, respectively), and the task is to find the number of subsequences of $\tau$ that have the same relative order as…

The purpose of this article is to examine and limit the conditions in which the P complexity class could be equivalent to the NP complexity class. Proof is provided by demonstrating that as the number of clauses in a NP-complete problem…

The Consecutive Ones Property is an important notion for binary matrices, both from a theoretical and applied point of view. Tucker gave in 1972 a characterization of matrices that do not satisfy the Consecutive Ones Property in terms of…

Evidences have suggested that counting representations are sometimes tractable even when the corresponding classification problem is almost impossible, or "wild" in a precise sense. Such counting problems are directly related to matrix…

A family of sets has the $(p, q)$ property if among any $p$ members of it some $q$ intersect. It is shown that if a finite family of compact convex sets in $\R^2$ has the $(p+1,2)$ property then it is pierced by $\lfloor \frac{p}{2} \rfloor…