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We present a new numerical scheme to study systems of non-convex, irregular, and punctured particles in an efficient manner. We employ this method to analyze regular packings of odd-shaped bodies, not only from a nanoparticle but also both…

Soft Condensed Matter · Physics 2015-05-28 Joost de Graaf , René van Roij , Marjolein Dijkstra

Structural organization and correlations are studied in very large packings of equally sized acrylic spheres, reconstructed in three-dimensions by means of X-ray computed tomography. A novel technique, devised to analyze correlations among…

Soft Condensed Matter · Physics 2007-09-19 Tomaso Aste

The structural properties of packed soft-core particles provide a platform to understand the cross-pollinated physical concepts in solid-state- and soft-matter physics. Confined on spherical surface, the traditional differential geometry…

Soft Condensed Matter · Physics 2025-01-06 Han Xie , Wenyu Liu , Zhenyue Lu , Jeff Z. Y. Chen , Yao Li

Sequentially-built random sphere-packings have been numerically studied in the packing fraction interval $0.329 < \gamma < 0.586$. For that purpose fast running geometrical algorithms have been designed in order to build about 300…

Soft Condensed Matter · Physics 2015-06-22 Marc Bletry , Jean Bletry

Producing dense and homogeneous powder layers with smooth free surface is challenging in additive manufacturing, as interparticle cohesion can strongly affect the powder packing structure and therefore influence the quality of the end…

Materials Science · Physics 2023-10-24 Sudeshna Roy , Hongyi Xiao , Vasileios Angelidakis , Thorsten Pöschel

We investigate how structural ordering, i.e. crystallization, affects the flow of bidisperse granular materials in a quasi-two-dimensional silo. By systematically varying the mass fraction of two particle sizes, we finely tune the degree of…

Soft Condensed Matter · Physics 2026-05-01 David Luce , Adrien Gans , Sébastien Kiesgen de Richter , Nicolas Vandewalle

We study by Molecular Dynamics simulation a dense one-component system of particles confined on a spherical substrate. We more specifically investigate the evolution of the structural and dynamical properties of the system when changing the…

Soft Condensed Matter · Physics 2018-05-23 Julien-Piera Vest , Gilles Tarjus , Pascal Viot

We show that hard spheres confined between two parallel hard plates pack denser with periodic adaptive prismatic structures which are composed of alternating prisms of spheres. The internal structure of the prisms adapts to the slit height…

We study various manifestations of structural crossover in the properties of a binary mixture of hard-spheres. For homogeneous mixtures that are sufficiently asymmetric, there is a crossover line in the phase diagram such that for…

Soft Condensed Matter · Physics 2009-11-11 C. Grodon , M. Dijkstra , R. Evans , R. Roth

Atomic packing is an important metric for characterizing protein structures, as it significantly influences various features including the stability, the rate of evolution and the functional roles of proteins. Packing in protein structures…

Biomolecules · Quantitative Biology 2025-05-27 Sotirios Touliopoulos , Nicholas M. Glykos

We study the periodic buckling patterns that emerge when elastic shells are subjected to geometric confinement. Residual swelling provides access to range of shapes (saddles, rolled sheets, cylinders, and spherical sections) which vary in…

Soft Condensed Matter · Physics 2018-10-12 Lucia Stein-Montalvo , Paul Costa , Matteo Pezzulla , Douglas P. Holmes

Shortly after the determination of the first protein x-ray crystal structures, researchers analyzed their cores and reported packing fractions $\phi \approx 0.75$, a value that is similar to close packing equal-sized spheres. A limitation…

Biomolecules · Quantitative Biology 2016-04-06 Jennifer C. Gaines , W. Wendell Smith , Lynne Regan , Corey S. O'Hern

The most efficient way to pack equally sized spheres isotropically in 3D is known as the random close packed state, which provides a starting point for many approximations in physics and engineering. However, the particle size distribution…

Soft Condensed Matter · Physics 2010-01-05 Robert S. Farr , Robert D. Groot

Through extensive Monte Carlo simulations, we systematically study the effect of chain stiffness on the packing ability of linear polymers composed of hard spheres in extremely confined monolayers, corresponding effectively to 2D films.…

A new graph-based order parameter is introduced for the characterization of atomistic structures. The order parameter is universal to any material/chemical system, and is transferable to all structural geometries. Three sets of data are…

Materials Science · Physics 2022-03-22 James Chapman , Nir Goldman , Brandon Wood

The structural properties of additive binary hard-sphere mixtures are addressed as a follow-up of a previous paper [S. Pieprzyk et al., Phys. Rev. E 101, 012117 (2020)]. The so-called rational-function approximation method and an approach…

Packings of identical objects have fascinated both scientists and laymen alike for centuries, in particular the sphere packings and the packings of identical regular tetrahedra. Mathematicians have tried for centuries to determine the…

Metric Geometry · Mathematics 2014-10-07 Chuanming Zong

We investigate the static and dynamic properties of a weakly polydisperse hard sphere system in the deeply supercooled state, i.e. at densities higher than that corresponding to the mode-coupling transition. The structural analysis reveals…

Soft Condensed Matter · Physics 2017-12-27 C. Patrick Royall , Walter Kob

Packing problems, which ask how to arrange a collection of objects in space to meet certain criteria, are important in a great many physical and biological systems, where geometrical arrangements at small scales control behaviour at larger…

Soft Condensed Matter · Physics 2016-05-23 Miranda C. Holmes-Cerfon

\textit{Ab initio} random structure searching based on density functional theory is used to determine the ground-state structures of ice at high pressures. Including estimates of lattice zero-point energies, ice is found to adopt three…

Other Condensed Matter · Physics 2013-05-29 Jeffrey M. McMahon
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