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We develop a mean-field theory for the totally asymmetric simple exclusion process (TASEP) with open boundaries, in order to investigate the so-called dynamical transition. The latter phenomenon appears as a singularity in the relaxation…

Statistical Mechanics · Physics 2020-08-11 Davide Botto , Alessandro Pelizzola , Marco Pretti , Marco Zamparo

In an accelerated exclusion process (AEP), each particle can "hop" to its adjacent site if empty as well as "kick" the frontmost particle when joining a cluster of size $\ell \leq \ell_\text{max}$. With various choices of the interaction…

Statistical Mechanics · Physics 2013-03-05 Jiajia Dong , Stefan Klumpp , R. K. P. Zia

In this paper, we study a two-lane totally asymmetric simple exclusion process (TASEP) coupled with random attachment and detachment of particles (Langmuir kinetics) in both lanes under open boundary conditions. Our model can describe the…

Quantitative Methods · Quantitative Biology 2009-11-13 Ruili Wang , Rui Jiang , Mingzhe Liu , Jiming Liu , Qing-song Wu

Using transfer matrix and finite-size scaling methods, we study the thermodynamic behavior of a lattice gas with two kinds of particles on the square lattice. Only excluded volume interactions are considered, so that the model is athermal.…

Statistical Mechanics · Physics 2015-09-03 T. J. Oliveira , J. F. Stilck

We consider the one-dimensional totally asymmetric simple exclusion model (TASEP model) with open boundary conditions and present the analytical computations leading to the exact formula for distance clearance distribution, i.e. probability…

Cellular Automata and Lattice Gases · Physics 2018-01-08 Milan Krbalek , Pavel Hrabak

We investigate the totally asymmetric simple exclusion process (TASEP) in the presence of a bottleneck, i.e. a sequence of consecutive defect sites with reduced hopping rate. The influence of such a bottleneck on the phase diagram is…

Cellular Automata and Lattice Gases · Physics 2009-11-13 Philip Greulich , Andreas Schadschneider

We introduce and analyze two general dynamical models for unidirectional movement of particles along a circular chain and an open chain of sites. The models include a soft version of the simple exclusion principle, that is, as the density…

Quantitative Methods · Quantitative Biology 2019-03-14 Eyal Bar-Shalom , Alexander Ovseevich , Michael Margaliot

The traffic of molecular motors which interact through mutual exclusion is studied theoretically for half-open tube-like compartments. These half-open tubes mimic the shapes of axons. The mutual exclusion leads to traffic jams or density…

Statistical Mechanics · Physics 2007-05-23 Melanie J. I. Muller , Stefan Klumpp , Reinhard Lipowsky

Cellular cargo can be bound to cytoskeletal filaments by one or multiple active or passive molecular motors. Recent experiments have shown that the presence of auxiliary, nondriving motors, results in an enhanced processivity of the cargo,…

Biomolecules · Quantitative Biology 2019-03-27 Filippo Posta , Maria R. D'Orsogna , Tom Chou

The totally asymmetric simple exclusion principle (TASEP) is a fundamental model in nonequilibrium statistical mechanics. It describes the stochastic unidirectional movement of particles along a 1D chain of ordered sites. We consider the…

Optimization and Control · Mathematics 2025-01-29 Lars Grüne , Kilian Pioch , Thomas Kriecherbauer , Michael Margaliot

In this paper we study analytically a simple one dimensional model of mass transport. We introduce a parameter $p$ that interpolates between continuous time dynamics ($p\to 0$ limit) and discrete parallel update dynamics ($p=1$). For each…

Statistical Mechanics · Physics 2007-05-23 R. Rajesh , Satya N. Majumdar

Traffic-like collective movements are observed at almost all levels of biological systems. Molecular motor proteins like, for example, kinesin and dynein, which are the vehicles of almost all intra-cellular transport in eukayotic cells,…

Biological Physics · Physics 2008-01-16 Debashish Chowdhury , Andreas Schadschneider , Katsuhiro Nishinari

We obtain exact travelling wave solutions for three families of stochastic one-dimensional nonequilibrium lattice models with open boundaries. These solutions describe the diffusive motion and microscopic structure of (i) of shocks in the…

Statistical Mechanics · Physics 2009-11-10 K. Krebs , F. H. Jafarpour , G. M. Schütz

We study the totally asymmetric simple exclusion process (TASEP) on $\mathbb{Z}$ with a general initial condition and a deterministically moving wall in front of the particles. Using colour-position symmetry, we express the one-point…

Probability · Mathematics 2025-09-24 Sabrina Gernholt

A simple self-driven lattice-gas model for collective biological motion is introduced. We find weakly first order phase transition from individual random walks to collective migration. A mean-field theory is presented to support the…

Statistical Mechanics · Physics 2009-10-31 Zoltan Csahok , Tamas Vicsek

mRNA translation is a crucial process that leads to protein synthesis in living cells. Therefore, it is a process that needs to work optimally for a cell to stay healthy and alive. With advancements in microscopy and novel experimental…

Subcellular Processes · Quantitative Biology 2023-12-20 Binil Shyam T , Rati Sharma

Flow of particles of two different species through a narrow channel with solely two discrete spatial positions is analyzed with respect to the species' capability to cooperate or compete for transport. In contrast to mean field approaches,…

Soft Condensed Matter · Physics 2017-12-13 Wolfgang Rudolf Bauer

We consider one-dimensional asymmetric exclusion processes with a simple attractive interaction, where the distance between consecutive particles is not allowed to exceed a certain limit and investigate the consequences of this coupling on…

Disordered Systems and Neural Networks · Physics 2009-11-13 Róbert Juhász

We investigate a model for driven exclusion processes where internal states are assigned to the particles. The latter account for diverse situations, ranging from spin states in spintronics to parallel lanes in intracellular or vehicular…

Statistical Mechanics · Physics 2007-06-13 Tobias Reichenbach , Erwin Frey , Thomas Franosch

Aligning self-propelled particles undergo a nonequilibrium flocking transition from apolar to polar phases as their interactions become stronger. We propose a thermodynamically consistent lattice model, in which the internal state of the…

Statistical Mechanics · Physics 2025-08-08 Karel Proesmans , Gianmaria Falasco , Atul Tanaji Mohite , Massimiliano Esposito , Étienne Fodor
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