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Recent advancements in microbiology have motivated the study of the production of nanostructures with applications such as biomedical computing and molecular robotics. One way to construct these structures is to construct branched DNA…

We present ChannelFlow-Tools, a configuration-driven framework that standardizes the end-to-end path from programmatic CAD solid generation to ML-ready inputs and targets for 3D obstructed channel flows. The toolchain integrates geometry…

Graphics · Computer Science 2025-09-22 Shubham Kavane , Kajol Kulkarni , Harald Koestler

Programmable assembly of nanoparticles into structures other than hexagonal lattices remains challenging. Assembling an open checkerboard or square lattice is harder to achieve compared to a close-packed hexagonal structure. Here, we…

We use numerical simulations to show how noninteracting hard particles binding to a deformable elastic shell may self-assemble into a variety of linear patterns. This is a result of the nontrivial elastic response to deformations of shells.…

Soft Condensed Matter · Physics 2011-02-25 Andela Šarić , Angelo Cacciuto

One emerging approach for the fabrication of complex architectures on the nanoscale is to utilize particles customized to intrinsically self-assemble into a desired structure. Inverse methods of statistical mechanics have proven…

Materials Science · Physics 2017-09-08 R. B. Jadrich , B. A. Lindquist , T. M. Truskett

We present a machine-learning based Volume Of Fluid method to simulate multi-material flows on three-dimensional domains. One of the novelties of the method is that the flux fraction is computed by evaluating a previously trained neural…

Numerical Analysis · Mathematics 2025-07-08 Moreno Pintore , Bruno Després

Transforming planar mesoscale devices into precise 3-D architectures is vital for next-generation flexible electronics, implants, and adaptive optics, yet wafer-based manufacturing to free-standing 3-D structures remain elusive. We…

Applied Physics · Physics 2025-05-27 Yue Wang , Kelvin Shum , Yuyang Song , Tian Chen

We present an acoustofluidic method based on travelling surface acoustic waves (TSAWs) for the induction of the self-assembly of microparticles inside a microfluidic channel. The particles are trapped above an interdigitated transducer,…

Soft Condensed Matter · Physics 2018-11-27 Ghulam Destgeer , Ali Hashmi , Jinsoo Park , Husnain Ahmed , Muhammad Afzal , Hyung Jin Sung

Self-assembly is one of the prevalent strategies used by living systems to fabricate ensembles of precision nanometer-scale structures and devices. The push for analogous approaches to create synthetic nanomaterials has led to the…

Different phoretic driving mechanisms have been proposed for the transport of solid or liquid microscopic inclusions in integrated chemical processes. However, the ability to reversibly address both the flow path, rate, and local reactant…

Soft Condensed Matter · Physics 2014-06-24 Sergi Hernàndez-Navarro , Pietro Tierno , Jordi Ignés-Mullol , Francesc Sagués

Hypergraphs are structures that can be decomposed or described; in other words they are recursively countable. Here, we get exact and asymptotic enumeration results on hypergraphs by means of exponential generating functions. The number of…

Discrete Mathematics · Computer Science 2008-06-20 Tsiriniaina Andriamampianina

Colloidal self-assembly -- the spontaneous organization of colloids into ordered structures -- has been considered key to produce next-generation materials. However, the present-day staggering variety of colloidal building blocks and the…

Soft Condensed Matter · Physics 2021-06-29 Gabriele Maria Coli , Emanuele Boattini , Laura Filion , Marjolein Dijkstra

Recent advances in random linear systems on finite fields have paved the way for the construction of constant-time data structures representing static functions and minimal perfect hash functions using less space with respect to existing…

Data Structures and Algorithms · Computer Science 2016-03-24 Marco Genuzio , Giuseppe Ottaviano , Sebastiano Vigna

Large arrays of individually controlled atoms trapped in optical tweezers are a very promising platform for quantum engineering applications. However, to date, only disordered arrays have been demonstrated, due to the non-deterministic…

By using a mixture model for the density distribution of the three pseudobond angles formed by $C_\alpha$ atoms of four consecutive residues, the local structural states are discretized as 17 conformational letters of a protein structural…

Biomolecules · Quantitative Biology 2007-05-23 Wei-Mou Zheng , Xin Liu

The increasing use of cloud computing and remote execution have made program security especially important. Code obfuscation has been proposed to make the understanding of programs more complicated to attackers. In this paper, we exploit…

Cryptography and Security · Computer Science 2013-11-04 Rasha Salah Omar , Ahmed El-Mahdy , Erven Rohou

Holographic techniques significantly extend the capabilities of laser tweezing, making possible extended trapping patterns for manipulating large numbers of particles and volumes of soft matter. We describe practical methods for creating…

Soft Condensed Matter · Physics 2009-10-31 Eric R. Dufresne , Gabriel C. Spalding , Matthew T. Dearing , Steven A. Sheets , David G. Grier

This paper introduces a method to generate highly selective encodings that can be magnetically "programmed" onto physical modules to enable them to self-assemble in chosen configurations. We generate these encodings based on Hadamard…

Robotics · Computer Science 2022-08-09 Martin Nisser , Yashaswini Makaram , Faraz Faruqi , Ryo Suzuki , Stefanie Mueller

Motion planning is an important and well-studied field of robotics. A typical approach to finding a route is to construct a {\em cell graph} representing a scene and then to find a path in such a graph. In this paper we present and analyze…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-03-23 Krzysztof Kaczmarski , Paweł Rzążewski , Albert Wolant

We describe the fabrication and characterization of solid 3-dimensional electrodes in direct contact with microfluidic channels, implemented using a single photolithography step, allowing operation in high-dielectric constant media.…

Soft Condensed Matter · Physics 2013-05-16 T. W. Herling , T. Müller , L. Rajah , J. N. Skepper , M. Vendruscolo , T. P. J. Knowles
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