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Empirical studies of graphs have contributed enormously to our understanding of complex systems. Known today as network science, what was originally a theoretical study of graphs has grown into a more scientific exploration of communities…

Quantitative Methods · Quantitative Biology 2020-01-01 Ryan E. Langendorf , Debra S. Goldberg

We are facing a real challenge when coping with the continuous acceleration of scientific production and the increasingly changing nature of science. In this article, we extend the classical framework of co-word analysis to the study of…

Physics and Society · Physics 2015-03-13 David Chavalarias , Jean-Philippe Cointet

To comprehend the multipartite organization of large-scale biological and social systems, we introduce a new information theoretic approach that reveals community structure in weighted and directed networks. The method decomposes a network…

Physics and Society · Physics 2008-02-13 M. Rosvall , C. T. Bergstrom

Automatic identification of plant specimens from amateur photographs could improve species range maps, thus supporting ecosystems research as well as conservation efforts. However, classifying plant specimens based on image data alone is…

Computer Vision and Pattern Recognition · Computer Science 2021-10-06 Riccardo de Lutio , Yihang She , Stefano D'Aronco , Stefania Russo , Philipp Brun , Jan D. Wegner , Konrad Schindler

Comparative graph and network analysis play an important role in both systems biology and pattern recognition, but existing surveys on the topic have historically ignored or underserved one or the other of these fields. We present an…

Social and Information Networks · Computer Science 2019-05-17 Emily Evans , Marissa Graham

We demonstrate the possibility of classifying causal systems into kinds that share a common structure without first constructing an explicit dynamical model or using prior knowledge of the system dynamics. The algorithmic ability to…

Machine Learning · Statistics 2016-12-16 Benjamin C. Jantzen

Spatial ecological networks are widely used to model interactions between georeferenced biological entities (e.g., populations or communities). The analysis of such data often leads to a two-step approach where groups containing similar…

Applications · Statistics 2014-02-24 Vincent Miele , Franck Picard , Stéphane Dray

The overwhelming amount of available scholarly literature in the life sciences poses significant challenges to scientists wishing to keep up with important developments related to their research, but also provides a useful resource for the…

Quantitative Methods · Quantitative Biology 2011-03-29 Huijun Wang , Ying Ding , Jie Tang , Xiao Dong , Bing He , Judy Qiu , David J. Wild

Network representations of systems from various scientific and societal domains are neither completely random nor fully regular, but instead appear to contain recurring structural building blocks. These features tend to be shared by…

Social and Information Networks · Computer Science 2016-10-20 Ian Barnett , Nishant Malik , Marieke L. Kuijjer , Peter J. Mucha , Jukka-Pekka Onnela

Understanding the structure and dynamics of biological networks is one of the important challenges in system biology. In addition, increasing amount of experimental data in biological networks necessitate the use of efficient methods to…

Artificial Intelligence · Computer Science 2012-07-17 Mohammadreza Keyvanpour , Fereshteh Azizani

There has been a long history of research into the structure and evolution of mankind's scientific endeavor. However, recent progress in applying the tools of science to understand science itself has been unprecedented because only recently…

Statistical Mechanics · Physics 2009-11-10 Katy Börner , Jeegar T. Maru , Robert L. Goldstone

A multiple-perspective co-citation analysis method is introduced for characterizing and interpreting the structure and dynamics of co-citation clusters. The method facilitates analytic and sense making tasks by integrating network…

Computers and Society · Computer Science 2017-10-24 Chaomei Chen , Fidelia Ibekwe-SanJuan , Jianhua Hou

Mark-and-Recapture is a methodology from Population Biology to estimate the number of a species without counting every individual. This is done by multiple samplings of the species using traps and discounting the instances that were caught…

Digital Libraries · Computer Science 2015-03-24 Chuan Wen Loe , Henrik Jeldtoft Jensen

When looking into recent research trends in the field of academic landscape, citation network analysis is common and automated clustering of many academic papers has been achieved by making good use of various techniques. However,…

Digital Libraries · Computer Science 2013-10-21 Akira Otsuki

Numerous social, medical, engineering and biological challenges can be framed as graph-based learning tasks. Here, we propose a new feature based approach to network classification. We show how dynamics on a network can be useful to reveal…

Machine Learning · Statistics 2017-06-01 Leonardo Gutierrez Gomez , Benjamin Chiem , Jean-Charles Delvenne

There is no much doubt that biotic interactions shape community assembly and ultimately the spatial co-variations between species. There is a hope that the signal of these biotic interactions can be observed and retrieved by investigating…

Machine Learning · Statistics 2025-07-15 Sara Si-Moussi , Esther Galbrun , Mickael Hedde , Giovanni Poggiato , Matthias Rohr , Wilfried Thuiller

Bibliometric studies based on the Web of Science (WOS) database have become an increasingly popular method for analysing the structure of scientific research. So do network approaches, which, based on empirical data, make it possible to…

Digital Libraries · Computer Science 2023-08-03 Tanya Araújo , Alexandre Abreu , Francisco Louçã

The multidisciplinary and socially anchored nature of Feminist Studies presents unique challenges for bibliometric analysis, as this research area transcends traditional disciplinary boundaries and reflects discussions from feminist and…

Digital Libraries · Computer Science 2024-11-28 Natsumi S. Shokida , Diego Kozlowski , Vincent Larivière

Microbial identification is a central issue in microbiology, in particular in the fields of infectious diseases diagnosis and industrial quality control. The concept of species is tightly linked to the concept of biological and clinical…

Machine Learning · Statistics 2015-06-25 Kévin Vervier , Pierre Mahé , Jean-Baptiste Veyrieras , Jean-Philippe Vert

Much has been said about the fusion of bio-inspired optimization algorithms and Deep Learning models for several purposes: from the discovery of network topologies and hyper-parametric configurations with improved performance for a given…

Neural and Evolutionary Computing · Computer Science 2020-08-11 Aritz D. Martinez , Javier Del Ser , Esther Villar-Rodriguez , Eneko Osaba , Javier Poyatos , Siham Tabik , Daniel Molina , Francisco Herrera