Related papers: N-fold integer programming in cubic time
In the k-mappability problem, we are given a string x of length n and integers m and k, and we are asked to count, for each length-m factor y of x, the number of other factors of length m of x that are at Hamming distance at most k from y.…
In the Bicluter Editing problem the input is a graph $G$ and an integer $k$, and the goal is to decide whether $G$ can be transformed into a bicluster graph by adding and removing at most $k$ edges. In this paper we give an algorithm for…
Many fundamental NP-hard problems can be formulated as integer linear programs (ILPs). A famous algorithm by Lenstra solves ILPs in time that is exponential only in the dimension of the program, and polynomial in the size of the ILP. That…
We revisit the algorithmic problem of finding a triangle in a graph: We give a randomized combinatorial algorithm for triangle detection in a given $n$-vertex graph with $m$ edges running in $O(n^{7/3})$ time, or alternatively in…
The classic algorithm [Papadimitriou, J.ACM '81] for IPs has a running time $n^{O(m)}(m\cdot\max\{\Delta,\|\textbf{b}\|_{\infty}\})^{O(m^2)}$, where $m$ is the number of constraints, $n$ is the number of variables, and $\Delta$ and…
Packing and covering linear programs (PC-LPs) form an important class of linear programs (LPs) across computer science, operations research, and optimization. In 1993, Luby and Nisan constructed an iterative algorithm for approximately…
In this paper we consider the time complexity of computing the sum and product of two $n$-bit numbers within the tile self-assembly model. The (abstract) tile assembly model is a mathematical model of self-assembly in which system…
In this paper, an exact algorithm in polynomial time is developed to solve unrestricted binary quadratic programs. The computational complexity is $O\left( n^{\frac{15}{2}}\right) $, although very conservative, it is sufficient to prove…
The \Problem{knapsack} problem is a fundamental problem in combinatorial optimization. It has been studied extensively from theoretical as well as practical perspectives as it is one of the most well-known NP-hard problems. The goal is to…
Solving linear systems and quadratic programming (QP) problems are both ubiquitous tasks in the engineering and computing fields. Direct methods for solving systems, such as Cholesky, LU, and QR factorizations, exhibit data-independent time…
The integer complexity $f(n)$ of a positive integer $n$ is defined as the minimum number of 1's needed to represent $n$, using additions, multiplications and parentheses. We present two simple and faster algorithms for computing the integer…
We give an algorithm to compute $N$ steps of a convolution quadrature approximation to a continuous temporal convolution using only $O(N \log N)$ multiplications and $O(\log N)$ active memory. The method does not require evaluations of the…
In the Edge Bipartization problem one is given an undirected graph $G$ and an integer $k$, and the question is whether $k$ edges can be deleted from $G$ so that it becomes bipartite. In 2006, Guo et al. [J. Comput. Syst. Sci.,…
In this paper, we study the problem of computing a minimum-width axis-aligned cubic shell that encloses a given set of $n$ points in a three-dimensional space. A cubic shell is a closed volume between two concentric and face-parallel cubes.…
We present experimental and theoretical results on a method that applies a numerical solver iteratively to solve several non-negative quadratic programming problems in geometric optimization. The method gains efficiency by exploiting the…
In this paper, we develop new algorithms for the basic RNA folding problem. Given an RNA sequence that contains $n$ nucleotides, the goal of the problem is to compute a pseudoknot-free secondary structure that maximizes the number of base…
We give an $O(N\cdot \log N\cdot 2^{O(\log^*N)})$ algorithm for multiplying two $N$-bit integers that improves the $O(N\cdot \log N\cdot \log\log N)$ algorithm by Sch\"{o}nhage-Strassen. Both these algorithms use modular arithmetic.…
We present three algorithms to compute the complexity $\Vert n\Vert$ of all natural numbers $ n\le N$. The first of them is a brute force algorithm, computing all these complexities in time $O(N^2)$ and space $O(N\log^2 N)$. The main…
Given a convex function $f$ on $\mathbb{R}^n$ with an integer minimizer, we show how to find an exact minimizer of $f$ using $O(n^2 \log n)$ calls to a separation oracle and $O(n^4 \log n)$ time. The previous best polynomial time algorithm…
We revisit a classical problem in computational geometry: finding the largest-volume axis-aligned empty box (inside a given bounding box) amidst $n$ given points in $d$ dimensions. Previously, the best algorithms known have running time…