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We consider problems of finding a maximum size/weight $t$-matching without forbidden subgraphs in an undirected graph $G$ with the maximum degree bounded by $t+1$, where $t$ is an integer greater than $2$. Depending on the variant forbidden…

Data Structures and Algorithms · Computer Science 2024-05-02 Katarzyna Paluch , Mateusz Wasylkiewicz

Given a vertex-weighted graph, the maximum weight independent set problem asks for a pair-wise non-adjacent set of vertices such that the sum of their weights is maximum. The branch-and-reduce paradigm is the de facto standard approach to…

Data Structures and Algorithms · Computer Science 2020-08-14 Alexander Gellner , Sebastian Lamm , Christian Schulz , Darren Strash , Bogdán Zaválnij

We study a natural generalization of the maximum weight many-to-one matching problem. We are given an undirected bipartite graph $G= (A \cup P, E)$ with weights on the edges in $E$, and with lower and upper quotas on the vertices in $P$. We…

Discrete Mathematics · Computer Science 2016-03-29 Ashwin Arulselvan , Ágnes Cseh , Martin Groß , David F. Manlove , Jannik Matuschke

Suppose you are given a graph $G=(V,E)$ with a weight assignment $w:V\rightarrow\mathbb{Z}$ and that your objective is to modify $w$ using legal steps such that all vertices will have the same weight, where in each legal step you are…

Discrete Mathematics · Computer Science 2015-07-03 Friedrich Eisenbrand , Shay Moran , Rom Pinchasi , Martin Skutella

The problem of maximising the number of cliques among $n$-vertex graphs from various graph classes has received considerable attention. We investigate this problem for the class of $1$-planar graphs where we determine precisely the maximum…

Combinatorics · Mathematics 2021-09-08 J. Pascal Gollin , Kevin Hendrey , Abhishek Methuku , Casey Tompkins , Xin Zhang

The monography presents a new algorithm for finding the clique of maximal length in a nonseparable graph. The algorithm is based on the properties of the representation of a clique as a subset of the set of cycles with a length of three,…

Discrete Mathematics · Computer Science 2024-10-30 Sergey Kurapov , Maxim Davidovsky

One powerful technique to solve NP-hard optimization problems in practice is branch-and-reduce search---which is branch-and-bound that intermixes branching with reductions to decrease the input size. While this technique is known to be very…

Data Structures and Algorithms · Computer Science 2018-10-26 Sebastian Lamm , Christian Schulz , Darren Strash , Robert Williger , Huashuo Zhang

Given an integer weighted bipartite graph $\{G=(U\sqcup V, E), w:E\rightarrow \mathbb{Z}\}$ we consider the problems of finding all the edges that occur in some minimum weight matching of maximum cardinality and enumerating all the minimum…

Combinatorics · Mathematics 2014-03-27 Carlos E. Valencia , Marcos C. Vargas

Maximal clique enumeration (MCE) is crucial for tasks like community detection and biological network analysis. Existing algorithms typically adopt the branch-and-bound framework with the vertex-oriented Bron-Kerbosch (BK) branching…

Databases · Computer Science 2024-12-12 Kaixin Wang , Kaiqiang Yu , Cheng Long

Coloring problems in graphs have been used to model a wide range of real applications. In particular, the List Coloring Problem generalizes the well-known Graph Coloring Problem for which many exact algorithms have been developed. In this…

Discrete Mathematics · Computer Science 2020-02-28 Mauro Lucci , Graciela Nasini , Daniel Severín

All the work made so far on edge-covering a graph by cliques focus on finding the minimum number of cliques that cover the graph. On this paper, we fix the number of cliques that cover a graph by the same number of vertices that the graph…

Combinatorics · Mathematics 2017-03-09 Leopoldo Taravilse

We propose a fast, parallel maximum clique algorithm for large sparse graphs that is designed to exploit characteristics of social and information networks. The method exhibits a roughly linear runtime scaling over real-world networks…

Social and Information Networks · Computer Science 2013-12-30 Ryan A. Rossi , David F. Gleich , Assefaw H. Gebremedhin , Md. Mostofa Ali Patwary

Maximum weight matching is one of the most fundamental combinatorial optimization problems with a wide range of applications in data mining and bioinformatics. Developing distributed weighted matching algorithms is challenging due to the…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-06 Sepehr Assadi , MohammadHossein Bateni , Vahab Mirrokni

Generalized Tur\'an problems have been a central topic of study in extremal combinatorics throughout the last few decades. One such problem, maximizing the number of cliques of a fixed order in a graph with fixed number of vertices and…

Combinatorics · Mathematics 2021-06-10 Debsoumya Chakraborti , Da Qi Chen

We present a new approach for improving motif scanning accuracy, based on analysis of in-between similarity. Given a set of motifs obtained from a scanning process, we construct an associated weighted graph. We also compute the expected…

Quantitative Methods · Quantitative Biology 2022-03-23 Braslav Rabar , Keti Nižetić , Pavle Goldstein

Finding optimal matchings in dense graphs is of general interest and of particular importance in social, transportation and biological networks. While developing optimal solutions for various matching problems is important, the running…

Data Structures and Algorithms · Computer Science 2020-11-16 Nitish K. Panigrahy , Prithwish Basu , Don Towsley

We consider the problem of identifying a maximum clique in a given graph. We have proposed a mathematical model for this problem. The model resembles the matrix decomposition of the adjacency matrix of a given graph. The objective function…

Optimization and Control · Mathematics 2023-07-19 Salma Omer , Montaz Ali

In this paper we introduce a new algorithm to study some NP-complete problems. This algorithm is a Markov Chain Monte Carlo (MCMC) inspired by the cavity method developed in the study of spin glass. We will focus on the maximum clique…

Statistical Mechanics · Physics 2015-06-25 Antonio Iovanella , Benedetto Scoppola , Elisabetta Scoppola

Network enrichment analysis methods allow to identify active modules without being biased towards a priori defined pathways. One of mathematical formulations of such analysis is a reduction to a maximum-weight connected subgraph problem. In…

Data Structures and Algorithms · Computer Science 2016-05-10 Alexander A. Loboda , Maxim N. Artyomov , Alexey A. Sergushichev

Clique is one of the most fundamental models for cohesive subgraph mining in network analysis. Existing clique model mainly focuses on unsigned networks. However, in real world, many applications are modeled as signed networks with positive…

Data Structures and Algorithms · Computer Science 2022-04-04 Zi Chen , Long Yuan , Xuemin Lin , Lu Qin , Wenjie Zhang