Related papers: Chem2Bio2RDF: A Linked Open Data Portal for Chemic…
This paper presents our Linked Open Data (LOD) infrastructures for genomic and experimental data related to microRNA biomolecules. Legacy data from two well-known microRNA databases with experimental data and observations, as well as change…
Linked Open Data (LOD) has been proliferated over various domains, however, there are still lots of open data in various format other than RDF, a standard data description framework in LOD. These open data can also be connected to entities…
The integration of Linked Open Data (LOD) content in Web pages is a challenging and sometimes tedious task for Web developers. At the same moment, most software packages for blogs, content management systems (CMS), and shop applications…
Background Semantic Web Technology (SWT) makes it possible to integrate and search the large volume of life science datasets in the public domain, as demonstrated by well-known linked data projects such as LODD, Bio2RDF, and Chem2Bio2RDF.…
Linked Open Data (LOD) is the publicly available RDF data in the Web. Each LOD entity is identfied by a URI and accessible via HTTP. LOD encodes globalscale knowledge potentially available to any human as well as artificial intelligence…
RDF data in the linked open data (LOD) cloud is very valuable for many different applications. In order to unlock the full value of this data, users should be able to issue complex queries on the RDF datasets in the LOD cloud. SPARQL can…
Artificial intelligence is revolutionizing computational chemistry, bringing unprecedented innovation and efficiency to the field. To further advance research and expedite progress, we introduce the Quantum Open Organic Molecular (QO2Mol)…
Drug safety research is crucial for maintaining public health, often requiring comprehensive data support. However, the resources currently available to the public are limited and fail to provide a comprehensive understanding of the…
The Linked Clinical Trials (LinkedCT) project aims at publishing the first open semantic web data source for clinical trials data. The database exposed by LinkedCT is generated by (1) transforming existing data sources of clinical trials…
Over the years several studies have demonstrated the ability to identify potential drug-drug interactions via data mining from the literature (MEDLINE), electronic health records, public databases (Drugbank), etc. While each one of these…
Background: Identifying new indications for approved drugs is a complex and time-consuming process that requires extensive knowledge of pharmacology, clinical data, and advanced computational methods. Recently, deep learning (DL) methods…
Solutions to the classic problems of dealing with heterogeneous data and making entire collections interoperable while ensuring that any annotation, which includes the recognition-and-reward system of scientific publishing, need to fit into…
Research resources (RRs) such as data, software, and tools are essential pillars of scientific research. The field of biomedicine, a critical scientific discipline, is witnessing a surge in research publications resulting in the…
While the biomedical community has published several "open data" sources in the last decade, most researchers still endure severe logistical and technical challenges to discover, query, and integrate heterogeneous data and knowledge from…
Human health is increasingly threatened by exposure to hazardous substances, particularly persistent and toxic chemicals. The link between these substances, often encountered in complex mixtures, and various diseases are demonstrated in…
This paper presents a generic web-based database interface implemented in Prolog. We discuss the advantages of the implementation platform and demonstrate the system's applicability in providing access to integrated biochemical data. Our…
Numerous digital humanities projects maintain their data collections in the form of text, images, and metadata. While data may be stored in many formats, from plain text to XML to relational databases, the use of the resource description…
The discovery of two-dimensional (2D) materials with tailored properties is critical to meet the increasing demands of high-performance applications across flexible electronics, optoelectronics, catalysis, and energy storage. However,…
An end-to-end platform for chemical science research has been developed that integrates data from computational and experimental approaches through a modern web-based interface. The platform offers a highly interactive visualization and…
Drug-drug interactions (DDIs) are a major concern in polypharmacy. Public databases often provide only qualitative descriptions without pharmacokinetic context. We present an interactive web tool that integrates 191,541 descriptive DDI…