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The simplest ring oscillator is made from three strongly nonlinear elements repressing each other unidirectionally resulting in the emergence of a limit cycle. A popular implementation of this scheme uses repressive genes in bacteria…

Biological Physics · Physics 2021-03-12 Edward H. Hellen , Evgeny Volkov

The synthetic construction of intracellular circuits is frequently hindered by a poor knowledge of appropriate kinetics and precise rate parameters. Here, we use generalized modeling (GM) to study the dynamical behavior of topological…

Molecular Networks · Quantitative Biology 2013-05-15 Ed Reznik , Tasso J. Kaper , Daniel Segre

Understanding cell fate selection remains a central challenge in developmental biology. We present a class of simple yet biologically-motivated mathematical models for cell differentiation that generically generate oscillations and hence…

Dynamical Systems · Mathematics 2021-10-08 Saeed Farjami , Karen Camargo Sosa , Jonathan H. P. Dawes , Robert N. Kelsh , Andrea Rocco

Using Gutzwiller's semiclassical periodic-orbit theory we demonstrate universal behaviour of the two-point correlator of the density of levels for quantum systems whose classical limit is fully chaotic. We go beyond previous work in…

Chaotic Dynamics · Physics 2009-10-13 Sebastian Müller , Stefan Heusler , Alexander Altland , Petr Braun , Fritz Haake

The problem of reliability of the dynamics in biological regulatory networks is studied in the framework of a generalized Boolean network model with continuous timing and noise. Using well-known artificial genetic networks such as the…

Molecular Networks · Quantitative Biology 2008-05-28 Stefan Braunewell , Stefan Bornholdt

Even if a linear system of ordinary differential equations has a globally attracting equilibrium at the origin, small disturbances from the equilibrium may lead to large transient excursions before the system stabilizes. This…

Dynamical Systems · Mathematics 2026-05-13 James Broda , Alanna Haslam-Hyde , Mary Lou Zeeman

We demonstrate the emergence of self-organized structures in the course of the relaxation of an initially excited, dissipative and finite chain of interacting particles in a periodic potential towards its many particle equilibrium…

Adaptation and Self-Organizing Systems · Physics 2016-08-19 Benno Liebchen , Peter Schmelcher

We investigate the existence and stability of travelling wave solutions in a continuum field of non-locally coupled identical phase oscillators with distance-dependent propagation delays. A comprehensive stability diagram in the parametric…

Pattern Formation and Solitons · Physics 2011-12-13 Gautam C. Sethia , Abhijit Sen

Drawing on the understanding of the logistic map, we propose a simple predator-prey model where predators and prey adapt to each other, leading to the co-evolution of the system. The special dynamics observed in periodic windows contribute…

Populations and Evolution · Quantitative Biology 2024-10-03 Misha Chai , Holger Kantz

We investigate different emergent dynamics namely oscillation quenching and revival of oscillation in a global network of identical oscillators coupled with diffusive (positive) delay coupling as it is perturbed by symmetry breaking…

Adaptation and Self-Organizing Systems · Physics 2019-02-20 Prosenjit Kundu , Lekha Sharma , Mauparna Nandan , Dibakar Ghosh , Chittaranjan Hens , Pinaki Pal

We analyse the stability of linear dynamical systems defined on sparse, random graphs with predator-prey, competitive, and mutualistic interactions. These systems are aimed at modelling the stability of fixed points in large systems defined…

Statistical Mechanics · Physics 2025-01-30 Andrea Marcello Mambuca , Chiara Cammarota , Izaak Neri

Spatio-temporally chaotic dynamics of transitional plane Couette flow may give rise to regular turbulent-laminar stripe patterns with a large-scale pattern wavelength and an oblique orientation relative to the laminar flow direction. A…

Fluid Dynamics · Physics 2019-12-23 Florian Reetz , Tobias M. Schneider

In the present article, we demonstrate the emergence and existence of the spiral wave chimera-like transient pattern in coupled ecological systems, composed of prey-predator patches, where the patches are connected in a three-dimensional…

Adaptation and Self-Organizing Systems · Physics 2022-08-02 Bidesh K. Bera , Srilena Kundu , Paulsamy Muruganandam , Dibakar Ghosh , M. Lakshmanan

We consider the general spatial three body problem and study the dynamics of planetary systems consisting of a star and two planets which evolve into 2/1 mean motion resonance and into inclined orbits. Our study is focused on the periodic…

Earth and Planetary Astrophysics · Physics 2017-02-10 K. I. Antoniadou , G. Voyatzis

We study dynamics and bifurcations of two-dimensional reversible maps having non-transversal heteroclinic cycles containing symmetric saddle periodic points. We consider one-parameter families of reversible maps unfolding generally the…

Dynamical Systems · Mathematics 2015-06-03 A. Delshams , S. V. Gonchenko , V. S. Gonchenko , J. T. Lázaro , O. Sten'kin

Like the inertia of a physical body describes its tendency to resist changes of its state of motion, inertia of an oscillator describes its tendency to resist changes of its frequency. Here we show that finite inertia of individual…

Adaptation and Self-Organizing Systems · Physics 2015-06-04 David J. Jörg

We provide a constructive method designed in order to control the stability of a given periodic orbit of a general completely integrable system. The method consists of a specific type of perturbation, such that the resulting perturbed…

Dynamical Systems · Mathematics 2015-03-04 Razvan M. Tudoran

Fast scrambling of quantum correlations, reflected by the exponential growth of Out-of-Time-Order Correlators (OTOCs) on short pre-Ehrenfest time scales, is commonly considered as a major quantum signature of unstable dynamics in quantum…

Quantum Physics · Physics 2023-08-22 Mathias Steinhuber , Peter Schlagheck , Juan-Diego Urbina , Klaus Richter

We study a system of coupled phase oscillators near a saddle-node on an invariant circle bifurcation and driven by random intrinsic frequencies. Under the variation of control parameters, the system undergoes a phase transition changing the…

Adaptation and Self-Organizing Systems · Physics 2022-08-18 Georgi S. Medvedev , Matthew S. Mizuhara , Andrew Phillips

We propose an exactly soluble W*-dynamical system generated by repeated harmonic perturbations of the one-mode quantum oscillator. In the present paper we deal with the case of isolated system. Although dynamics is Hamiltonian and…

Functional Analysis · Mathematics 2014-04-14 Hiroshi Tamura , Valentin Zagrebnov