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This thesis is a compendium of research which brings together ideas from the fields of Complex Networks and Computational Neuroscience to address two questions regarding neural systems: 1) How the activity of neurons, via synaptic changes,…

Neurons and Cognition · Quantitative Biology 2013-02-19 Samuel Johnson

The dynamics of systems of interacting agents is determined by the structure of their coupling network. The knowledge of the latter is, therefore, highly desirable, for instance, to develop efficient control schemes, to accurately predict…

Adaptation and Self-Organizing Systems · Physics 2021-10-13 Melvyn Tyloo , Robin Delabays , Philippe Jacquod

Revealing physical interactions in complex systems from observed collective dynamics constitutes a fundamental inverse problem in science. Current reconstruction methods require access to a system's model or dynamical data at a level of…

Physics and Society · Physics 2018-01-18 Mor Nitzan , Jose Casadiego , Marc Timme

Chimera states, marked by the coexistence of order and disorder in systems of coupled oscillators, have captivated researchers with their existence and intricate patterns. Despite ongoing advances, a fully understanding of the genesis of…

Adaptation and Self-Organizing Systems · Physics 2024-12-10 Malbor Asllani , Alex Arenas

In this article we give an in depth overview of the recent advances in the field of equilibrium networks. After outlining this topic, we provide a novel way of defining equilibrium graph (network) ensembles. We illustrate this concept on…

Statistical Mechanics · Physics 2007-05-23 I. Farkas , I. Derenyi , G. Palla , T. Vicsek

Understanding network functionality requires integrating structure and dynamics, and emergent latent geometry induced by network-driven processes captures the low-dimensional spaces governing this interplay. Here, we focus on…

Physics and Society · Physics 2025-12-02 Andrea Filippo Beretta , Davide Zanchetta , Sebastiano Bontorin , Manlio De Domenico

Recent advancements of complex network representation among several disciplines motivated the investigation of exoplanetary dynamics by means of recurrence networks. We are able to recover different dynamical regimes by means of various…

Earth and Planetary Astrophysics · Physics 2019-08-07 Tamas Kovacs

There is enormous interest -- both mathematically and in diverse applications -- in understanding the dynamics of coupled oscillator networks. The real-world motivation of such networks arises from studies of the brain, the heart, ecology,…

Dynamical Systems · Mathematics 2023-08-22 Stephen Coombes , Mustafa Sayli , Rüdiger Thul , Rachel Nicks , Mason A Porter , Yi Ming Lai

This paper proposes network recasting as a general method for network architecture transformation. The primary goal of this method is to accelerate the inference process through the transformation, but there can be many other practical…

Machine Learning · Computer Science 2019-06-20 Joonsang Yu , Sungbum Kang , Kiyoung Choi

Networks are widely used in the biological, physical, and social sciences as a concise mathematical representation of the topology of systems of interacting components. Understanding the structure of these networks is one of the outstanding…

Data Analysis, Statistics and Probability · Physics 2007-06-21 M. E. J. Newman , E. A. Leicht

Recent network research has focused on the cascading failures in a system of interdependent networks and the necessary preconditions for system collapse. An important question that has not been addressed is how to repair a failing system…

Physics and Society · Physics 2016-01-27 M. A. Di Muro , C. E. La Rocca , H. E. Stanley , S. Havlin , L. A. Braunstein

We show that a complex network of phase oscillators may display interfaces between domains (clusters) of synchronized oscillations. The emergence and dynamics of these interfaces are studied in the general framework of interacting phase…

Statistical Mechanics · Physics 2010-12-07 D. Li , I. Leyva , J. A. Almendral , I. Sendina-Nadal , J. M. Buldu , S. Havlin , S. Boccaletti

Multiplex networks are collections of networks with identical nodes but distinct layers of edges. They are genuine representations for a large variety of real systems whose elements interact in multiple fashions or flavors. However,…

Physics and Society · Physics 2024-02-27 Daniel Kaiser , Siddharth Patwardhan , Minsuk Kim , Filippo Radicchi

Different network models have been suggested for the topology underlying complex interactions in natural systems. These models are aimed at replicating specific statistical features encountered in real-world networks. However, it is rarely…

Physics and Society · Physics 2012-06-11 Stefano Cardanobile , Volker Pernice , Moritz Deger , Stefan Rotter

The structure of a genetic network is uncovered by studying its response to external stimuli (input signals). We present a theory of propagation of an input signal through a linear stochastic genetic network. It is found that there are…

Molecular Networks · Quantitative Biology 2009-11-11 Ovidiu Lipan , Wing H. Wong

While renormalization groups are fundamental in physics, renormalization of complex networks remains vague in its conceptual definition and methodology. Here, we propose a novel strategy to renormalize complex networks. Rather than…

Statistical Mechanics · Physics 2024-03-13 Sungwon Jung , Sang Hoon Lee , Jaeyoon Cho

Due to time delays in signal transmission and processing, phase lags are inevitable in realistic complex oscillator networks. Conventional wisdom is that phase lags are detrimental to network synchronization. Here we show that judiciously…

Chaotic Dynamics · Physics 2018-08-15 Huawei Fan , Ying-Cheng Lai , Shi-Xian Qu , Xingang Wang

Many real-world complex systems, such as epidemic spreading networks and ecosystems, can be modeled as networked dynamical systems that produce multivariate time series. Learning the intrinsic dynamics from observational data is pivotal for…

Machine Learning · Computer Science 2024-12-30 Yanna Ding , Zijie Huang , Malik Magdon-Ismail , Jianxi Gao

Much of contemporary systems biology owes its success to the abstraction of a network, the idea that diverse kinds of molecular, cellular, and organismal species and interactions can be modeled as relational nodes and edges in a graph of…

Molecular Networks · Quantitative Biology 2017-05-26 Joseph L. Natale , David Hofmann , Damian G. Hernández , Ilya Nemenman

Heterogeneous networks provide a universal framework for extracting subsystem-level features of a complex system, which are critical in graph colouring, pattern classification, and motif identification. When abstracting physical systems…

Optics · Physics 2025-07-31 Seungmok Youn , Kunwoo Park , Ikbeom Lee , Gitae Lee , Namkyoo Park , Sunkyu Yu