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Related papers: Network reconstruction from random phase-resetting

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Repeating patterns of spike sequences from a neuronal network have been proposed to be useful in the reconstruction of the network topology. Reverberations in a physiologically realistic model with various physical connection topologies…

Neurons and Cognition · Quantitative Biology 2014-07-15 Hao Song , Chun-Chung Chen , Jyh-Jang Sun , Pik-Yin Lai , C. K. Chan

We present a novel method of reconstructing the phase-amplitude dynamics directly from measured electrophysiological signals to estimate the coupling between brain regions. For this purpose, we use the recent advances in the field of…

Dynamical Systems · Mathematics 2025-05-28 Azamat Yeldesbay , Gemma Huguet , Silvia Daun

Accessing the network through which a propagation dynamics diffuse is essential for understanding and controlling it. In a few cases, such information is available through direct experiments or thanks to the very nature of propagation data.…

Physics and Society · Physics 2020-12-15 Alfredo Braunstein , Alessandro Ingrosso , Anna Paola Muntoni

Starting with an initial random network of oscillators with a heterogeneous frequency distribution, its autonomous synchronization ability can be largely improved by appropriately rewiring the links between the elements. Ensembles of…

Adaptation and Self-Organizing Systems · Physics 2015-05-18 Tatsuo Yanagita , Alexander S. Mikhailov

Recently, a framework for analyzing time series by constructing an associated complex network has attracted significant research interest. One of the advantages of the complex network method for studying time series is that complex network…

Chaotic Dynamics · Physics 2015-06-04 Ruoxi Xiang , Jie Zhang , Xiao-ke Xu , Michael Small

We present a method for reconstructing resonant interactions in weakly coupled phase oscillator systems from noisy time series. Instead of attempting to recover the full phase equations, which may be non-identifiable in the presence of…

Chaotic Dynamics · Physics 2026-05-12 Bengi Dönmez , Bob Rink

We analyze the interplay of synchronization and structure evolution in an evolving network of phase oscillators. An initially random network is adaptively rewired according to the dynamical coherence of the oscillators, in order to enhance…

Statistical Mechanics · Physics 2007-09-27 Pablo M. Gleiser , Damián H. Zanette

In the data analysis of oscillatory systems, methods based on phase reconstruction are widely used to characterize phase-locking properties and inferring the phase dynamics. The main component in these studies is an extraction of the phase…

Data Analysis, Statistics and Probability · Physics 2021-11-22 Erik Gengel , Arkady Pikovsky

A sufficiently connected topology linking the constituent units of a complex system is usually seen as a prerequisite for the emergence of collective phenomena such as synchronization. We present a random network of heterogeneous phase…

Chaotic Dynamics · Physics 2018-11-26 Marco Faggian , Francesco Ginelli , Fernando Rosas , Zoran Levnajić

In this article, we present a method to reconstruct the topology of a partially observed radial network of linear dynamical systems with bi-directional interactions. Our approach exploits the structure of the inverse power spectral density…

Systems and Control · Computer Science 2018-07-13 Saurav Talukdar , Deepjyoti Deka , Michael Chertkov , Murti Salapaka

It is a significant challenge to predict the network topology from a small amount of dynamical observations. Different from the usual framework of the node-based reconstruction, two optimization approaches (i.e., the global and partitioned…

Physics and Society · Physics 2016-03-03 Ming Xu , Chuan-Yun Xu , Huan Wang , Yong-Kui Li , Jing-Bo Hu , Ke-Fei Cao

Reverse engineering of complex dynamical networks is important for a variety of fields where uncovering the full topology of unknown networks and estimating parameters characterizing the network structure and dynamical processes are of…

Data Analysis, Statistics and Probability · Physics 2012-12-19 Wen-Xu Wang , Jie Ren , Ying-Cheng Lai , Baowen Li

Complex networks datasets often come with the problem of missing information: interactions data that have not been measured or discovered, may be affected by errors, or are simply hidden because of privacy issues. This Element provides an…

Physics and Society · Physics 2021-08-11 Giulio Cimini , Rossana Mastrandrea , Tiziano Squartini

This paper presents a new approach for analysing structural properties of time series from complex systems. Starting from the concept of recurrences in phase space, the recurrence matrix of a time series is interpreted as the adjacency…

Chaotic Dynamics · Physics 2011-03-03 Reik V. Donner , Y. Zou , Jonathan F. Donges , Norbert Marwan , Juergen Kurths

Can a graph specifying the pattern of connections of a dynamical network be reconstructed from statistical properties of a signal generated by such a system? In this model study, we present an evolutionary algorithm for reconstruction of…

Adaptation and Self-Organizing Systems · Physics 2009-11-07 Mads Ipsen , Alexander S. Mikhailov

Learning the structure of a network from time series data, in particular cyclostationary data, is of significant interest in many disciplines such as power grids, biology and finance. In this article, an algorithm is presented for…

Systems and Control · Computer Science 2019-09-20 Harish Doddi , Saurav Talukdar , Deepjyoti Deka , Murti Salapaka

From mass extinction to cell death, complex networked systems often exhibit abrupt dynamic transitions between desirable and undesirable states. Such transitions are often caused by topological perturbations, such as node or link removal,…

Adaptation and Self-Organizing Systems · Physics 2022-07-22 Hillel Sanhedrai , Jianxi Gao , Amir Bashan , Moshe Schwartz , Shlomo Havlin , Baruch Barzel

Biological systems are driven by intricate interactions among the complex array of molecules that comprise the cell. Many methods have been developed to reconstruct network models of those interactions. These methods often draw on large…

Molecular Networks · Quantitative Biology 2018-06-29 Marieke Lydia Kuijjer , Matthew Tung , GuoCheng Yuan , John Quackenbush , Kimberly Glass

Understanding complex systems which exhibit desynchronization as an emergent property should have important implications, particularly in treating neurological disorders and designing efficient communication networks. Here were demonstrate…

Mathematical Physics · Physics 2012-11-06 J. Borresen , D. Broomhead

A general phase reduction method for a network of coupled dynamical elements exhibiting collective oscillations, which is applicable to arbitrary networks of heterogeneous dynamical elements, is developed. A set of coupled adjoint equations…

Adaptation and Self-Organizing Systems · Physics 2018-04-04 Hiroya Nakao , Sho Yasui , Masashi Ota , Kensuke Arai , Yoji Kawamura