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Roots provide basic functions to plants such as water/nutrient uptake and anchoring in soil. The growth and development of root systems contribute to colonizing the surrounding soil and optimizing the access to resources. It is usually…

Soft Condensed Matter · Physics 2019-04-24 M. Fakih , J. -Y. Delenne , F. Radjai , T. Fourcaud

How morphogenesis depends on cell properties is an active direction of research. Here, we focus on mechanical models of growing plant tissues, where microscopic (sub)cellular structure is taken into account. In order to establish links…

Analysis of PDEs · Mathematics 2023-11-21 Arezki Boudaoud , Annamaria Kiss , Mariya Ptashnyk

Many organs of higher organisms, such as the vascular system, lung, kidney, pancreas, liver and glands, are heavily branched structures. The branching process during lung development has been studied in great detail and is remarkably…

Tissues and Organs · Quantitative Biology 2012-03-08 Denis Menshykau , Conradin Kraemer , Dagmar Iber

Functional-structural models provide detailed representations of tree growth and their application to forestry seems full of prospects. However, owing to the complexity of tree architecture, parametric identification of such models remains…

Dynamical Systems · Mathematics 2010-10-26 Veronique Letort , Paul-Henry Cournède , Amélie Mathieu , Philippe De Reffye , Thiéry Constant

GreenLab Model is a functional-structural plant growth model that combines both organogenesis (at each cycle, new organs are created with respect to genetic rules) and photosynthesis (organs are filled with the biomass produced by the…

Tissues and Organs · Quantitative Biology 2016-08-14 Amelie Mathieu , Paul-Henry Cournède , Philippe De Reffye

Functional-structural plant models (FSPM) replicate plants' responses to their environment and are useful for predicting behavior in a changing climate. However, they rely on detailed measurements of traits, which are difficult to collect…

In this article, we demonstrate a data-driven approach to investigate the behavior of cotton fabric modified by straight and zig-zag stitches. Existing literature in understanding the mechanical behavior of soft materials (e.g.,…

Materials Science · Physics 2025-01-22 Harmony Werth , Kazi Zihan Hossain , Momena Monwar , M. Rashed Khan

This paper is the instructions for the proceeding of the International Symposium on Crop. Sugar beet crop models have rarely taken into account the morphogenetic process generating plant architecture despite the fact that plant…

Tissues and Organs · Quantitative Biology 2009-02-16 Sébastien Lemaire , Fabienne Maupas , Paul-Henry Cournède , Philippe De Reffye

We consider the low energy effective field model of graphene monolayer. Coulomb interactions are taken into account. The model is simulated numerically using the lattice discretization with staggered fermions. The two point fermionic Green…

High Energy Physics - Lattice · Physics 2013-03-04 M. V. Ulybyshev , M. A. Zubkov

Cells moving on a two dimensional substrate generate motion by polymerizing actin filament networks inside a flat membrane protrusion. New filaments are generated by branching off existing ones, giving rise to branched network structures.…

Biological Physics · Physics 2015-06-29 Mohammadhosein Razbin , Martin Falcke , Panayotis Benetatos , Annette Zippelius

When assessing the strength of sawn lumber for use in engineering applications, the sizes and locations of knots are an important consideration. Knots are the most common visual characteristics of lumber, that result from the growth of tree…

Applications · Statistics 2023-02-16 Shuxian Fan , Samuel W. K. Wong , James V. Zidek

The anisotropy of wood within the radial-tangential (RT) growth plane has a major influence on the cracking behavior perpendicular to grain. Within the scope of this work, a two-dimensional discrete element model is developed, consisting of…

Materials Science · Physics 2007-05-23 Falk K. Wittel , Gerhard Dill-Langer , Bernd-H. Kroeplin

Plant organ outgrowth superficially appears like the continuous mechanical deformation of a sheet of cells. Yet, how precisely cells as individual mechanical entities can act to morph a tissue reliably and efficiently into three dimensions…

Biological Physics · Physics 2020-04-28 Jason Khadka , Jean-Daniel Julien , Karen Alim

The adoption of agroecological practices will be crucial to address the challenges of climate change and biodiversity loss. Such practices favor the cultivation of plants in complex mixtures with layouts differing from the monoculture…

Populations and Evolution · Quantitative Biology 2024-09-26 Julian Talbot , Pascal Viot , David Colliaux

Following up on a previous work we examine a model of transportation network in some source-sink flow paradigm subjected to growth and resource allocation. The model is inspired from plants, and we add rules and factors that are analogous…

Adaptation and Self-Organizing Systems · Physics 2021-02-03 Olivier Bui , Xavier Leoncini

Plant scientists use Functional Structural Plant Models (FSPMs) to model plant systems within a limited space-time range. To allow FSPMs to abstract complex plant systems beyond a single model's limitation, an integration that compounds…

Computers and Society · Computer Science 2018-07-11 Qinqin Long , Winfried Kurth , Christophe Pradal , Vincent Migault , Benoît Pallas

Both action potentials and mechanosensitive signalling are an important communication mechanisms in plants. Considering an information theoretic framework, this paper explores the effective range of multiple action potentials for a long…

Molecular Networks · Quantitative Biology 2019-11-13 Hamdan Awan , Kareem Zeid , Raviraj S. Adve , Nigel Wallbridge , Carrol Plummer , Andrew W. Eckford

A major challenge in plant developmental biology is to understand how plant growth is coordinated by interacting hormones and genes. To meet this challenge, it is important to not only use experimental data, but also formulate a…

Applications · Statistics 2019-10-22 Samuel E. Jackson , Ian Vernon , Junli Liu , Keith Lindsey

The investigation of leaf-level traits in response to varying environmental conditions has immense importance for understanding plant ecology. Remote sensing technology enables measurement of the reflectance of plants to make inferences…

Applications · Statistics 2022-10-04 Philip A. White , Michael F. Christensen , Henry Frye , Alan E. Gelfand , John A. Silander

Branch and cut is the dominant paradigm for solving a wide range of mathematical programming problems -- linear or nonlinear -- combining efficient search (via branch and bound) and relaxation-tightening procedures (via cutting planes, or…

Optimization and Control · Mathematics 2023-07-11 Aleksandr M. Kazachkov , Pierre Le Bodic , Sriram Sankaranarayanan
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